U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4339345 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4339345, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4339345
Gene description
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A-like
Locus tag
OSNPB_050519900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
STT3A; STT3-A; OsJ_19234; P0483D07.5
Expression
Ubiquitous expression in leaves after flowering (RPKM 52.9), roots after flowering (RPKM 48.1) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4339345 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
23
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (25811203..25817171, complement)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene chaperone protein ClpB1-like Neighboring gene probable transcriptional regulatory protein At2g25830 Neighboring gene uncharacterized LOC107277484 Neighboring gene nuclear pore complex protein NUP35

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables oligosaccharyl transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein glycosylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A
Names
LOC_Os05g44360
Oligosaccharyl transferase subunit STT3A
P0599F04.15
Protein STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A
XP_015639423.1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402614.1 → NP_001389543.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A

    Status: VALIDATED

    Source sequence(s)
    AK070919, AK101078, CB663560, CI367477, CI517749, CI751885
    UniProtKB/Swiss-Prot
    Q6F2Z1
    UniProtKB/TrEMBL
    A0A0P0WPJ2

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    25811203..25817171 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783937.2 → XP_015639423.1  dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3A

    UniProtKB/Swiss-Prot
    Q6F2Z1
    Conserved Domains (1) summary
    cl21590
    Location:23 → 438
    PMT_2; Dolichyl-phosphate-mannose-protein mannosyltransferase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6F2Z1.1 GenPept UniProtKB/Swiss-Prot:Q6F2Z1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials