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LOC4338500 ERBB-3 BINDING PROTEIN 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338500, updated on 18-Aug-2023

Summary

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Gene symbol
LOC4338500
Gene description
ERBB-3 BINDING PROTEIN 1
Locus tag
OSNPB_050350500
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
Rgbp16
Expression
Ubiquitous expression in flower buds (RPKM 108.1), flowers (RPKM 73.4) and 6 other tissues See more
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Genomic context

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See LOC4338500 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
10
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (16552208..16555856)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene embryonic abundant protein 1-like Neighboring gene small nucleolar RNA R71 Neighboring gene ran-binding protein 1 homolog c Neighboring gene uncharacterized LOC4338502

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
ERBB-3 BINDING PROTEIN 1
Names
DNA-binding protein GBP16
Os05g0350500

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    16552208..16555856
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785210.2 → XP_015640696.1  ERBB-3 BINDING PROTEIN 1

    UniProtKB/TrEMBL
    O22523, Q0DIY5, Q5W6H1
    Conserved Domains (1) summary
    cl00279
    Location:1 → 358
    APP_MetAP; A family including aminopeptidase P, aminopeptidase M, and prolidase. Also known as metallopeptidase family M24. This family of enzymes is able to cleave amido-, imido- and amidino-containing bonds. Members exibit relatively narrow substrate specificity ...
Nucleotide Protein
Heading Accession and Version

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