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LOC4338417 superoxide dismutase [Mn], mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4338417, updated on 3-Apr-2024

Summary

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Gene symbol
LOC4338417
Gene description
superoxide dismutase [Mn], mitochondrial-like
Locus tag
OSNPB_050323900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
sodA; RMSOD1; sodAOs1; P0018A03; OsJ_18067
Expression
Ubiquitous expression in flower buds (RPKM 235.6), mature seeds (RPKM 225.4) and 6 other tissues See more
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Genomic context

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See LOC4338417 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
6
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (15046735..15051400)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9266328 Neighboring gene protein ACTIVITY OF BC1 COMPLEX KINASE 3, chloroplastic Neighboring gene transcription factor GTE10 Neighboring gene tRNA (guanine(26)-N(2))-dimethyltransferase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Cloning and sequencing analysis of a complementary DNA for manganese-superoxide dismutase from rice (Oryza sativa L.). Sakamoto A, et al. Plant Physiol, 1993 Dec. PMID 8290649, Free PMC Article
  2. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables superoxide dismutase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in superoxide metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
superoxide dismutase [Mn], mitochondrial
Names
LOC_Os05g25850
manganese-superoxide dismutase
XP_015640127.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402510.1 → NP_001389439.1  superoxide dismutase [Mn], mitochondrial

    Status: VALIDATED

    Source sequence(s)
    CB668027, CI005545, CI293042
    UniProtKB/Swiss-Prot
    A0A0P0WKM7, Q0DJ64, Q43008, Q43121, Q7GCN0

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    15046735..15051400
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015784641.2 → XP_015640127.1  superoxide dismutase [Mn], mitochondrial

    UniProtKB/Swiss-Prot
    Q43008
    Conserved Domains (1) summary
    PLN02471
    Location:1 → 231
    PLN02471; superoxide dismutase [Mn]
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q43008.2 GenPept UniProtKB/Swiss-Prot:Q43008

Gene LinkOut

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Molecular Biology Databases
Research Materials