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LOC4337733 S-adenosylmethionine synthase 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4337733, updated on 6-Jun-2024

Summary

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Gene symbol
LOC4337733
Gene description
S-adenosylmethionine synthase 1-like
Locus tag
OSNPB_050135700
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
SAM1; SAMS; OsJ_016271
Expression
Broad expression in flowers (RPKM 1877.3), roots before flowering (RPKM 1819.6) and 6 other tissues See more
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Genomic context

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See LOC4337733 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (2088998..2091952)

Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene peroxidase 5 Neighboring gene peroxidase 5 Neighboring gene pto-interacting protein 1 Neighboring gene nuclear envelope-associated protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methionine adenosyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in S-adenosylmethionine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
S-adenosylmethionine synthase 1
Names
AdoMet synthase 1
LOC_Os05g04510
MAT 1
Methionine adenosyltransferase 1
P0519E07.14
S-adenosylmethionine synthase I
XP_015638780.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402481.1 → NP_001389410.1  S-adenosylmethionine synthase 1

    Status: VALIDATED

    Source sequence(s)
    CI114904, CI603722, KF737320
    UniProtKB/Swiss-Prot
    A2Y053, P46611, Q0DKY4, Q6AVZ2, Q8VXC5
    UniProtKB/TrEMBL
    A0A8J8Y8R6, B7EKA4, B9FGX2, Q1H9C0

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

    Range
    2088998..2091952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015783294.2 → XP_015638780.1  S-adenosylmethionine synthase 1

    UniProtKB/Swiss-Prot
    Q0DKY4
    UniProtKB/TrEMBL
    B7EKA4
    Conserved Domains (1) summary
    PLN02243
    Location:4 → 389
    PLN02243; S-adenosylmethionine synthase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0DKY4.1 GenPept UniProtKB/Swiss-Prot:Q0DKY4

Gene LinkOut

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Molecular Biology Databases
Research Materials