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LOC4336275 protein NLP2-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4336275, updated on 1-Aug-2024

Summary

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Gene symbol
LOC4336275
Gene description
protein NLP2-like
Locus tag
OSNPB_040495800
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
NLP2; OsNLP2; OsJ_15319
Expression
Ubiquitous expression in roots after flowering (RPKM 10.5), leaves after flowering (RPKM 8.6) and 6 other tissues See more
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Genomic context

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Location:
chromosome: 4
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (25292757..25298846)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (24795476..24802079)

Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107278299 Neighboring gene uncharacterized LOC107280650 Neighboring gene uncharacterized LOC4336276 Neighboring gene uncharacterized LOC136356346 Neighboring gene (+)-neomenthol dehydrogenase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein NLP2
Names
LOC_Os04g41850
NIN-like protein 2
Nodule inception protein-like protein 2
OSJNBa0067K08.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001419634.1 → NP_001406563.1  protein NLP2

    Status: VALIDATED

    Source sequence(s)
    AK060753, AK103154, CI518766
    UniProtKB/Swiss-Prot
    A0A0P0WBZ3, B9FFX1, Q0JC27, Q7XQI3
    UniProtKB/TrEMBL
    B8ARC7, Q01IQ3

  2. NM_001419635.1 → NP_001406564.1  protein NLP2

    Status: VALIDATED

    Source sequence(s)
    AK060753, AK103154, CI518766, CI571729
    UniProtKB/Swiss-Prot
    A0A0P0WBZ3, B9FFX1, Q0JC27, Q7XQI3
    UniProtKB/TrEMBL
    B8ARC7, Q01IQ3

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

    Range
    25292757..25298846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_066309166.1 → XP_066165263.1  protein NLP2 isoform X1

    UniProtKB/TrEMBL
    B8ARC7, Q01IQ3

  2. XM_066309165.1 → XP_066165262.1  protein NLP2 isoform X1

    UniProtKB/TrEMBL
    B8ARC7, Q01IQ3

  3. XM_015781037.3 → XP_015636523.1  protein NLP2 isoform X2

    UniProtKB/Swiss-Prot
    A0A0P0WBZ3, B9FFX1, Q0JC27, Q7XQI3
    UniProtKB/TrEMBL
    B8ARC7, Q01IQ3
    Conserved Domains (2) summary
    pfam02042
    Location:567 → 615
    RWP-RK; RWP-RK domain
    cl02720
    Location:835 → 915
    PB1; The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes, such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q0JC27.2 GenPept UniProtKB/Swiss-Prot:Q0JC27

Gene LinkOut

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