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LOC4335531 40S ribosomal protein S27 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4335531, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4335531
Gene description
40S ribosomal protein S27
Locus tag
OSNPB_040346100
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 121.4), roots before flowering (RPKM 95.3) and 6 other tissues See more
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Genomic context

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See LOC4335531 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (16457857..16459548)

Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 3 Neighboring gene prolyl 4-hydroxylase 1 Neighboring gene dCTP pyrophosphatase 1 Neighboring gene putative B3 domain-containing protein Os04g0346900

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in ribosomal small subunit assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of cytosolic small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
40S ribosomal protein S27
Names
Os04g0346100

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001378505.1 → NP_001365434.1  40S ribosomal protein S27

    Status: VALIDATED

    Source sequence(s)
    BT132262
    UniProtKB/TrEMBL
    A2X4T7, A2XS31, A3ASL5, Q01L64, Q7XVZ0
    Conserved Domains (1) summary
    PLN00209
    Location:1 → 86
    PLN00209; ribosomal protein S27; Provisional

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

    Range
    16457857..16459548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015781116.2 → XP_015636602.2  40S ribosomal protein S27

    Conserved Domains (1) summary
    PLN00209
    Location:56 → 141
    PLN00209; ribosomal protein S27; Provisional
Nucleotide Protein
Heading Accession and Version

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