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LOC4334786 conserved oligomeric Golgi complex subunit 2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334786, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4334786
Gene description
conserved oligomeric Golgi complex subunit 2
Locus tag
OSNPB_030849600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 22.0), leaves after flowering (RPKM 20.3) and 6 other tissues See more
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Genomic context

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See LOC4334786 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
12
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (35736109..35741620, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like Neighboring gene putative disease resistance protein RGA4 Neighboring gene putative pentatricopeptide repeat-containing protein At1g77010, mitochondrial Neighboring gene uncharacterized protein At4g15970

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Golgi transport complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
conserved oligomeric Golgi complex subunit 2
Names
Os03g0849600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    35736109..35741620 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777432.2 → XP_015632918.1  conserved oligomeric Golgi complex subunit 2

    UniProtKB/TrEMBL
    A0A0P0W5K7, B8ANN3, Q0DLS6, Q84LH7
    Conserved Domains (2) summary
    pfam06148
    Location:24 → 156
    COG2; COG (conserved oligomeric Golgi) complex component, COG2
    pfam12022
    Location:590 → 716
    DUF3510; Domain of unknown function (DUF3510)
Nucleotide Protein
Heading Accession and Version

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