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wgl2 white green leaf2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334247, updated on 21-Dec-2023

Summary

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Gene symbol
wgl2
Gene description
white green leaf2
Locus tag
OSNPB_030769100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
rps9
Expression
Broad expression in leaves before flowering (RPKM 86.5), flowers (RPKM 38.0) and 4 other tissues See more
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Genomic context

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See wgl2 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
2
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (31845463..31847238, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938352 Neighboring gene uncharacterized LOC9266933 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene BTB/POZ domain-containing protein At3g50780

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. The rice white green leaf 2 gene causes defects in chloroplast development and affects the plastid ribosomal protein S9. Qiu Z, et al. Rice (N Y), 2018 Jul 11. PMID 29995230, Free PMC Article
  2. A novel plant nuclear gene encoding chloroplast ribosomal protein S9 has a transit peptide related to that of rice chloroplast ribosomal protein L12. Arimura S, et al. FEBS Lett, 1999 May 7. PMID 10359080
  3. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in translation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mitochondrial small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of plastid small ribosomal subunit IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
30S ribosomal protein S9, chloroplastic
Names
Os03g0769100
ribosomal protein S9

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    31845463..31847238 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015773380.2 → XP_015628866.1  30S ribosomal protein S9, chloroplastic

    UniProtKB/TrEMBL
    A2XMC2, Q6AU40, Q9XJ28
    Conserved Domains (1) summary
    CHL00079
    Location:96 → 223
    rps9; ribosomal protein S9
Nucleotide Protein
Heading Accession and Version

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