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LOC4334056 deoxyhypusine synthase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4334056, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4334056
Gene description
deoxyhypusine synthase
Locus tag
OSNPB_030740600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in flower buds (RPKM 10.9), leaves before flowering (RPKM 9.5) and 6 other tissues See more
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Genomic context

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See LOC4334056 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (30381656..30386100)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107277107 Neighboring gene uncharacterized LOC4334055 Neighboring gene CWF19-like protein 2 Neighboring gene DNA repair protein XRCC4

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables deoxyhypusine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in peptidyl-lysine modification to peptidyl-hypusine IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
deoxyhypusine synthase
Names
Os03g0740600

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    30381656..30386100
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015772672.2 → XP_015628158.1  deoxyhypusine synthase isoform X1

    UniProtKB/TrEMBL
    B9FBQ7, Q0DNQ6, Q7Y1G4
    Conserved Domains (1) summary
    pfam01916
    Location:52 → 361
    DS; Deoxyhypusine synthase

  2. XM_026023995.1 → XP_025879780.1  deoxyhypusine synthase isoform X2

    Conserved Domains (1) summary
    pfam01916
    Location:1 → 229
    DS; Deoxyhypusine synthase

RNA

  1. XR_001544083.2 RNA Sequence

  2. XR_001544081.2 RNA Sequence

  3. XR_001544082.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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