U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4333881 protein CASP [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333881, updated on 21-Dec-2023

Summary

Go to the top of the page Help
Gene symbol
LOC4333881
Gene description
protein CASP
Locus tag
OSNPB_030710900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 30.8), leaves after flowering (RPKM 25.5) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4333881 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (28671083..28679034)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene ACD11 homolog protein Neighboring gene 14-3-3-like protein GF14-F Neighboring gene zinc finger protein CONSTANS-LIKE 16 Neighboring gene phosphatidylinositol 4-kinase alpha 1

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in intra-Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
protein CASP
Names
Os03g0710900

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    28671083..28679034
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015777593.2 → XP_015633079.1  protein CASP

    UniProtKB/TrEMBL
    A0A0N7KHX3, A0A8J8Y5W4, B9FB54, Q10E21
    Conserved Domains (2) summary
    TIGR02168
    Location:139 → 477
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam08172
    Location:448 → 676
    CASP_C; CASP C terminal
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases