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LOC4333183 mechanosensitive ion channel protein 2, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4333183, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4333183
Gene description
mechanosensitive ion channel protein 2, chloroplastic
Locus tag
OSNPB_030432900
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 47.2), flowers (RPKM 37.6) and 6 other tissues See more
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Genomic context

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See LOC4333183 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
14
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (18204738..18214985)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280210 Neighboring gene uncharacterized LOC107278002 Neighboring gene protein SHORT-ROOT 2 Neighboring gene glycine-rich cell wall structural protein 2-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
mechanosensitive ion channel protein 2, chloroplastic
Names
Os03g0432900

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    18204738..18214985
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775790.2 → XP_015631276.1  mechanosensitive ion channel protein 2, chloroplastic

    UniProtKB/TrEMBL
    B9F967, Q75I10
    Conserved Domains (1) summary
    cl39057
    Location:240 → 441
    MS_channel; Mechanosensitive ion channel

  2. XM_015775791.2 → XP_015631277.1  mechanosensitive ion channel protein 2, chloroplastic

    UniProtKB/TrEMBL
    B9F967, Q75I10
    Conserved Domains (1) summary
    cl39057
    Location:240 → 441
    MS_channel; Mechanosensitive ion channel
Nucleotide Protein
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