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LOC4332369 serine/threonine-protein phosphatase PP1-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332369, updated on 6-Jun-2024

Summary

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Gene symbol
LOC4332369
Gene description
serine/threonine-protein phosphatase PP1-like
Locus tag
OSNPB_030268000
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OJ1364E02.17
Expression
Ubiquitous expression in roots before flowering (RPKM 102.7), flower buds (RPKM 88.6) and 6 other tissues See more
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Genomic context

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See LOC4332369 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (8884194..8889737)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene mitochondrial substrate carrier family protein B Neighboring gene protein DA1-related 2 Neighboring gene rootletin Neighboring gene serine/threonine-protein kinase ATG1c

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein serine/threonine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
serine/threonine-protein phosphatase PP1; LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1
Names
LOC_Os03g16110
OJA1364E02.7
XP_015630205.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001402129.1 → NP_001389058.1  serine/threonine-protein phosphatase PP1

    Status: VALIDATED

    Source sequence(s)
    AK073140, CI070875, CI639537, CI642487
    UniProtKB/Swiss-Prot
    P48489, Q10NJ4, Q84J82
    UniProtKB/TrEMBL
    B9F783

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    8884194..8889737
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774719.2 → XP_015630205.1  LOW QUALITY PROTEIN: serine/threonine-protein phosphatase PP1

    Conserved Domains (2) summary
    PTZ00480
    Location:20 → 314
    PTZ00480; serine/threonine-protein phosphatase; Provisional
    cd07414
    Location:20 → 309
    MPP_PP1_PPKL; PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P48489.2 GenPept UniProtKB/Swiss-Prot:P48489

Gene LinkOut

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Molecular Biology Databases
Research Materials