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LOC4332176 protein GID8 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332176, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4332176
Gene description
protein GID8 homolog
Locus tag
OSNPB_030235100
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in roots after flowering (RPKM 30.5), leaves after flowering (RPKM 30.0) and 6 other tissues See more
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Genomic context

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See LOC4332176 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (7132570..7135997)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene peroxidase A2 Neighboring gene peroxidase A2 Neighboring gene pentatricopeptide repeat-containing protein At4g37170 Neighboring gene protein NRT1/ PTR FAMILY 8.3 Neighboring gene protein NRT1/ PTR FAMILY 8.3

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protein GID8 homolog
Names
Os03g0235100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    7132570..7135997
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015774305.2 → XP_015629791.1  protein GID8 homolog

    UniProtKB/TrEMBL
    A3AFU9, B8AJN9, Q0DTP0, Q10PG5
    Conserved Domains (2) summary
    smart00667
    Location:42 → 75
    LisH; Lissencephaly type-1-like homology motif
    pfam10607
    Location:81 → 225
    CLTH; CTLH/CRA C-terminal to LisH motif domain
Nucleotide Protein
Heading Accession and Version

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