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LOC4332152 squalene monooxygenase [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4332152, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4332152
Gene description
squalene monooxygenase
Locus tag
OSNPB_030231700
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Ubiquitous expression in leaves before flowering (RPKM 10.4), flowers (RPKM 7.8) and 6 other tissues See more
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Genomic context

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See LOC4332152 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
10
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (6950857..6957434, complement)

Chromosome 3 - NC_029258.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein HOX19-like Neighboring gene atherin Neighboring gene branched-chain-amino-acid aminotransferase 2, chloroplastic Neighboring gene squalene monooxygenase Neighboring gene protein SHORT HYPOCOTYL IN WHITE LIGHT 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029258.1 Chromosome 3 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables squalene monooxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sterol biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
squalene monooxygenase
Names
Os03g0231700

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029258.1 Reference IRGSP-1.0 Primary Assembly

    Range
    6950857..6957434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015775221.2 → XP_015630707.1  squalene monooxygenase isoform X3

    UniProtKB/TrEMBL
    Q10PK4
    Conserved Domains (1) summary
    pfam08491
    Location:119 → 392
    SE; Squalene epoxidase

  2. XM_015775219.2 → XP_015630705.1  squalene monooxygenase isoform X1

    UniProtKB/TrEMBL
    A2XE79, A3AFR9, Q10PK6, Q8GTX8
    Conserved Domains (1) summary
    PLN02985
    Location:57 → 517
    PLN02985; squalene monooxygenase

  3. XM_015775218.2 → XP_015630704.1  squalene monooxygenase isoform X1

    UniProtKB/TrEMBL
    A2XE79, A3AFR9, Q10PK6, Q8GTX8
    Conserved Domains (1) summary
    PLN02985
    Location:57 → 517
    PLN02985; squalene monooxygenase

  4. XM_015775220.2 → XP_015630706.1  squalene monooxygenase isoform X2

    UniProtKB/TrEMBL
    A2XE79, A3AFR9, Q0DTR2, Q10PK5, Q8GTX8
    Conserved Domains (1) summary
    PLN02985
    Location:57 → 517
    PLN02985; squalene monooxygenase
Nucleotide Protein
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