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LOC4330164 glutamate dehydrogenase 3, mitochondrial-like [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4330164, updated on 6-Jun-2024

Summary

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Gene symbol
LOC4330164
Gene description
glutamate dehydrogenase 3, mitochondrial-like
Locus tag
OSNPB_020650900
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
GDH3; OsGDH3; OsJ_07745
Expression
Ubiquitous expression in leaves before flowering (RPKM 1.1), roots before flowering (RPKM 1.0) and 6 other tissues See more
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Genomic context

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See LOC4330164 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
9
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (26240129..26242983)

Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene probable serine/threonine-protein kinase PBL19 Neighboring gene SNF2 domain-containing protein CLASSY 4 Neighboring gene U6 snRNA phosphodiesterase Neighboring gene protein ORANGE, chloroplastic

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Localization of NAD-isocitrate dehydrogenase and glutamate dehydrogenase in rice roots: candidates for providing carbon skeletons to NADH-glutamate synthase. Abiko T, et al. Plant Cell Physiol, 2005 Oct. PMID 16120687
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables glutamate dehydrogenase (NAD+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamate catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
glutamate dehydrogenase 3, mitochondrial
Names
Glutamate dehydrogenase 3, mitochondrial
OSJNBb0012J10.18
OSNPB_020650900
Os02g0650900
glutamate dehydrogenase A
putative ADH glutamate dehydrogenase
XP_015622776.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001416796.1 → NP_001403725.1  glutamate dehydrogenase 3, mitochondrial

    Status: VALIDATED

    Source sequence(s)
    AB035927, AP014958, AU094007
    UniProtKB/Swiss-Prot
    Q6H3Y7
    UniProtKB/TrEMBL
    A2X7V1

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

    Range
    26240129..26242983
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767290.1 → XP_015622776.1  glutamate dehydrogenase 3, mitochondrial

    UniProtKB/Swiss-Prot
    Q6H3Y7
    Conserved Domains (1) summary
    PLN02477
    Location:1 → 410
    PLN02477; glutamate dehydrogenase
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6H3Y7.1 GenPept UniProtKB/Swiss-Prot:Q6H3Y7

Gene LinkOut

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Research Materials