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LOC4327367 UDP-glucuronic acid decarboxylase 1 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4327367, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4327367
Gene description
UDP-glucuronic acid decarboxylase 1
Locus tag
OSNPB_010837300
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
UXS-4
Expression
Ubiquitous expression in roots before flowering (RPKM 60.1), flowers (RPKM 49.6) and 6 other tissues See more
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Genomic context

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See LOC4327367 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (35896979..35900576)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene putative pectate lyase 21 Neighboring gene caffeoylshikimate esterase Neighboring gene uncharacterized LOC112937593 Neighboring gene ruvB-like protein 1 Neighboring gene uncharacterized LOC4327369

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Cloning and expression of a UDP-glucuronic acid decarboxylase gene in rice. Suzuki K, et al. J Exp Bot, 2003 Aug. PMID 12815035
  2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables NAD+ binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables UDP-glucuronate decarboxylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in D-xylose metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
UDP-glucuronic acid decarboxylase 1
Names
Os01g0837300
P0506B12.41-1
P0506B12.41-2
UDP-glucuronic acid decarboxylase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    35896979..35900576
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015765764.2 → XP_015621250.1  UDP-glucuronic acid decarboxylase 1

    UniProtKB/TrEMBL
    Q0JHX7, Q5QMG6, Q8W3J1
    Conserved Domains (1) summary
    PLN02166
    Location:1 → 410
    PLN02166; dTDP-glucose 4,6-dehydratase
Nucleotide Protein
Heading Accession and Version

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