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LOC4326262 uncharacterized LOC4326262 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4326262, updated on 12-Jul-2024

Summary

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Gene symbol
LOC4326262
Gene description
uncharacterized LOC4326262
Locus tag
OSNPB_010268600
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
P0667A10.3
Expression
Broad expression in leaves after flowering (RPKM 5.3), roots after flowering (RPKM 3.7) and 4 other tissues See more
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Genomic context

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See LOC4326262 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (9257501..9266219)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (9244542..9253403)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC136354919 Neighboring gene probable peptide/nitrate transporter At3g43790 Neighboring gene DNA gyrase subunit B, chloroplastic/mitochondrial-like Neighboring gene protein MIZU-KUSSEI 1-like Neighboring gene rhomboid-like protein 20 Neighboring gene Holliday junction resolvase MOC1, chloroplastic

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables carbohydrate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables hydrolase activity, hydrolyzing O-glycosyl compounds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in carbohydrate metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein LOC4326262
Names
Os01g0268600
P0011D01.29
alpha-glucosidase -like
alpha-glucosidase YihQ
sulfoquinovosidase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    9257501..9266219
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015771752.3 → XP_015627238.1  uncharacterized protein LOC4326262 isoform X1

    UniProtKB/TrEMBL
    A0A0P0V0Z1, A0A5S6RD55, Q0JNS2, Q5NBJ1
    Conserved Domains (1) summary
    PRK10426
    Location:311 → 930
    PRK10426; alpha-glucosidase; Provisional

  2. XM_026024597.2 → XP_025880382.1  uncharacterized protein LOC4326262 isoform X2

    Conserved Domains (1) summary
    PRK10426
    Location:311 → 878
    PRK10426; alpha-glucosidase; Provisional
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
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