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LOC4325407 non-specific phospholipase C2 [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4325407, updated on 21-Dec-2023

Summary

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Gene symbol
LOC4325407
Gene description
non-specific phospholipase C2
Locus tag
OSNPB_010955000
Gene type
protein coding
RefSeq status
MODEL
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression
Broad expression in roots before flowering (RPKM 25.3), flower buds (RPKM 17.6) and 4 other tissues See more
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Genomic context

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See LOC4325407 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (42063219..42067808, complement)

Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene protein LATERAL ROOT PRIMORDIUM 1 Neighboring gene aspartyl protease AED3 Neighboring gene probable calcium-binding protein CML31 Neighboring gene putative calcium-binding protein CML23

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables hydrolase activity, acting on ester bonds IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phospholipid catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
non-specific phospholipase C2
Names
B1139B11.14-1
Os01g0955000
putative phosphatidylglycerol specific phospholipase C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

  1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

    Range
    42063219..42067808 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015767942.2 → XP_015623428.1  non-specific phospholipase C2

    UniProtKB/TrEMBL
    A0A0P0VD16, A2WZ77, Q0JFX9, Q8RYK2
    Conserved Domains (1) summary
    pfam04185
    Location:30 → 389
    Phosphoesterase; Phosphoesterase family
Nucleotide Protein
Heading Accession and Version

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