U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC4324940 zinc finger protein STOP1 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

Gene ID: 4324940, updated on 16-Jul-2024

Summary

Go to the top of the page Help
Gene symbol
LOC4324940
Gene description
zinc finger protein STOP1 homolog
Locus tag
OSNPB_010871200
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Oryza sativa Japonica Group
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as
OsJ_04239
Expression
Broad expression in leaves before flowering (RPKM 228.6), roots after flowering (RPKM 179.4) and 6 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC4324940 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (38402682..38407083)
102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (37773939..37778473)

Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 Neighboring gene uncharacterized LOC4324939 Neighboring gene bifunctional aspartate aminotransferase and glutamate/aspartate-prephenate aminotransferase Neighboring gene uncharacterized LOC9270135

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
  • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
  • BioProject: PRJNA243371
  • Publication: PMID 26387578
  • Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in response to acidic pH IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in response to aluminum ion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
zinc finger protein STOP1 homolog
Names
LOC_Os01g65080
OSJNBb0008G24.8
P0039A07.24-1
Protein STOP1 homolog
putative transparent testa 1
putative zinc finger protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396869.1 → NP_001383798.1  zinc finger protein STOP1 homolog

    Status: VALIDATED

    Source sequence(s)
    AK072211, BT129075, CI611458, CI774980
    UniProtKB/Swiss-Prot
    A0A0P0VAW2, Q943I6
    UniProtKB/TrEMBL
    F1DK81
    Conserved Domains (2) summary
    sd00017
    Location:284 → 304
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:282 → 304
    zf-C2H2; Zinc finger, C2H2 type

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

  1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

    Range
    38402682..38407083
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015785814.3 → XP_015641300.1  zinc finger protein STOP1 homolog isoform X1

    UniProtKB/Swiss-Prot
    A0A0P0VAW2, Q943I6
    UniProtKB/TrEMBL
    F1DK81
    Conserved Domains (2) summary
    sd00017
    Location:284 → 304
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:282 → 304
    zf-C2H2; Zinc finger, C2H2 type
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q943I6.1 GenPept UniProtKB/Swiss-Prot:Q943I6

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials