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mark1.S MAP/microtubule affinity-regulating kinase 1 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432201, updated on 11-Apr-2024

Summary

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Official Symbol
mark1.S
Official Full Name
MAP/microtubule affinity-regulating kinase 1 S homeolog
Primary source
Xenbase:XB-GENE-962870
Locus tag
XELAEV_18028666mg
See related
EnsemblRapid:ENSXLAG00005002287
Gene type
protein coding
RefSeq status
MODEL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
mark1
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Genomic context

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Location:
chromosome: 5S
Exon count:
19
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 5S NC_054380.1 (13978334..14079040, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 5S NC_030733.1 (13992264..14110750, complement)

Chromosome 5S - NC_054380.1Genomic Context describing neighboring genes Neighboring gene H2.0 like homeobox S homeolog Neighboring gene uncharacterized protein C1orf115-like Neighboring gene 3'(2'),5'-bisphosphate nucleotidase 1-like Neighboring gene glutamyl-prolyl-tRNA synthetase 1 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC80341

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
  
enables kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
enables tau-protein kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular signal transduction IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in dendrite IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
MAP/microtubule affinity-regulating kinase 1 S homeolog; serine/threonine-protein kinase MARK1
XP_018119856.1
XP_041420182.1
XP_041420183.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054380.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    13978334..14079040 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041564248.1 → XP_041420182.1  serine/threonine-protein kinase MARK1 isoform X1

    UniProtKB/TrEMBL
    A0A1L8G148, A0A974CSI8, Q6INT7
    Conserved Domains (3) summary
    cd12196
    Location:693 → 790
    MARK1-3_C; C-terminal, kinase associated domain 1 (KA1), a phospholipid binding domain, of microtubule affinity-regulating kinases 1-3
    cd14405
    Location:331 → 371
    UBA_MARK1; UBA domain found in serine/threonine-protein kinase MARK1 and similar proteins
    cd14072
    Location:59 → 311
    STKc_MARK; Catalytic domain of the Serine/Threonine Kinases, MAP/microtubule affinity-regulating kinases

  2. XM_041564249.1 → XP_041420183.1  serine/threonine-protein kinase MARK1 isoform X2

    UniProtKB/TrEMBL
    A0A8J1KTU8, Q6INT7
    Conserved Domains (3) summary
    cd12196
    Location:690 → 787
    MARK1-3_C; C-terminal, kinase associated domain 1 (KA1), a phospholipid binding domain, of microtubule affinity-regulating kinases 1-3
    cd14405
    Location:331 → 371
    UBA_MARK1; UBA domain found in serine/threonine-protein kinase MARK1 and similar proteins
    cd14072
    Location:59 → 311
    STKc_MARK; Catalytic domain of the Serine/Threonine Kinases, MAP/microtubule affinity-regulating kinases

  3. XM_018264367.2 → XP_018119856.1  serine/threonine-protein kinase MARK1 isoform X3

    UniProtKB/TrEMBL
    A0A8J0VAB1, Q6INT7
    Related
    ENSXLAP00005006950.1, ENSXLAT00005007059.1

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001091657.1: Suppressed sequence

    Description
    NM_001091657.1: This RefSeq was removed because it is a nonsense-mediated mRNA decay (NMD) candidate.
Nucleotide Protein Strain
Heading Accession and Version

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