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ppp4r3a.S protein phosphatase 4 regulatory subunit 3A S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 432127, updated on 11-Apr-2024

Summary

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Official Symbol
ppp4r3a.S
Official Full Name
protein phosphatase 4 regulatory subunit 3A S homeolog
Primary source
Xenbase:XB-GENE-5858385
Locus tag
XELAEV_18041320mg
See related
EnsemblRapid:ENSXLAG00005008931
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
smek1; ppp4r3a
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Genomic context

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Location:
chromosome: 8S
Exon count:
15
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (21236382..21268954)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (21152235..21185491)

Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene fibulin 5 S homeolog Neighboring gene tandem C2 domains, nuclear S homeolog Neighboring gene coiled-coil domain containing 88C S homeolog Neighboring gene uncharacterized LOC121397729

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC82226

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables protein phosphatase activator activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within DNA damage response IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of protein phosphatase 4 complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
serine/threonine-protein phosphatase 4 regulatory subunit 3
Names
SMEK homolog 1, suppressor of mek1
protein phosphatase 4, regulatory subunit 3A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001091588.1 → NP_001085057.1  serine/threonine-protein phosphatase 4 regulatory subunit 3

    See identical proteins and their annotated locations for NP_001085057.1

    Status: PROVISIONAL

    Source sequence(s)
    BC072239
    UniProtKB/Swiss-Prot
    Q6INN7
    UniProtKB/TrEMBL
    A0A974C1Y4
    Related
    ENSXLAP00005025957.1, ENSXLAT00005026676.1
    Conserved Domains (2) summary
    pfam04802
    Location:166 → 357
    SMK-1; Component of IIS longevity pathway SMK-1
    cl17171
    Location:7 → 65
    PH-like; Pleckstrin homology-like domain

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    21236382..21268954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6INN7.1 GenPept UniProtKB/Swiss-Prot:Q6INN7

Gene LinkOut

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