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GPNMB glycoprotein nmb [ Gallus gallus (chicken) ]

Gene ID: 428431, updated on 5-Mar-2024

Summary

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Symbol
GPNMBprovided by CGNC
Full Name
glycoprotein nmbprovided by CGNC
Primary source
CGNC:8320
See related
Ensembl:ENSGALG00010001409
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See GPNMB in Genome Data Viewer
Location:
chromosome: 2
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 2 NC_052533.1 (31030943..31048138)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 2 NC_052574.1 (31076819..31094016)

Chromosome 2 - NC_052533.1Genomic Context describing neighboring genes Neighboring gene nucleoporin NUP42-like Neighboring gene nucleoporin-like protein 2 Neighboring gene nucleoporin NUP42-like Neighboring gene mitochondrial assembly of ribosomal large subunit 1 Neighboring gene insulin like growth factor 2 mRNA binding protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables integrin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane glycoprotein NMB
Names
glycoprotein (transmembrane) nmb

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052533.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    31030943..31048138
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_425991.7 → XP_425991.3  transmembrane glycoprotein NMB

    UniProtKB/TrEMBL
    A0A8V0X5A2
    Related
    ENSGALP00010001695.1, ENSGALT00010003238.1
    Conserved Domains (2) summary
    TIGR00864
    Location:219 → 351
    PCC; polycystin cation channel protein
    cd00146
    Location:259 → 315
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052574.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    31076819..31094016
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040665962.2 → XP_040521896.1  transmembrane glycoprotein NMB

    UniProtKB/TrEMBL
    A0A8V0X5A2
    Conserved Domains (1) summary
    cd00146
    Location:259 → 315
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
Nucleotide Protein
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