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PRDM6 PR/SET domain 6 [ Gallus gallus (chicken) ]

Gene ID: 426800, updated on 5-Mar-2024

Summary

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Symbol
PRDM6provided by CGNC
Full Name
PR/SET domain 6provided by CGNC
Primary source
CGNC:3984
See related
Ensembl:ENSGALG00010001215
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See PRDM6 in Genome Data Viewer
Location:
chromosome: Z
Exon count:
8
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) Z NC_052572.1 (85406524..85478741)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) Z NC_059536.1 (85406524..85478741)

Chromosome Z - NC_052572.1Genomic Context describing neighboring genes Neighboring gene sorting nexin 24 Neighboring gene peptidylprolyl isomerase C Neighboring gene centrosomal protein 120 Neighboring gene uncharacterized LOC101749094

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
putative histone-lysine N-methyltransferase PRDM6
Names
PR domain 6
PR domain containing 6
XP_015136321.2
XP_046793218.1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052572.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    85406524..85478741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015280835.4 → XP_015136321.2  putative histone-lysine N-methyltransferase PRDM6

    UniProtKB/TrEMBL
    A0A8V0XA22
    Related
    ENSGALP00010001366.1, ENSGALT00010002816.1
    Conserved Domains (3) summary
    COG5048
    Location:378 → 559
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:478 → 498
    ZF_C2H2; C2H2 Zn finger [structural motif]
    cd19191
    Location:219 → 347
    PR-SET_PRDM6; PR-SET domain found in PR domain zinc finger protein 6 (PRDM6) and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_059536.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    85406524..85478741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046937262.1 → XP_046793218.1  putative histone-lysine N-methyltransferase PRDM6

    UniProtKB/TrEMBL
    A0A8V0XA22
Nucleotide Protein
Heading Accession and Version

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