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COL4A4 collagen type IV alpha 4 chain [ Gallus gallus (chicken) ]

Gene ID: 424799, updated on 17-Aug-2024

Summary

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Official Symbol
COL4A4provided by CGNC
Official Full Name
collagen type IV alpha 4 chainprovided by CGNC
Primary source
CGNC:3674
See related
Ensembl:ENSGALG00010023702
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 9
Exon count:
49
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 9 NC_052540.1 (8974912..9039530, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 9 NC_052581.1 (8776407..8841037, complement)

Chromosome 9 - NC_052540.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107051845 Neighboring gene uncharacterized LOC107051846 Neighboring gene rhomboid domain containing 1 Neighboring gene uncharacterized LOC107051843 Neighboring gene collagen type IV alpha 3 chain Neighboring gene mitochondrial ribosomal protein L44 Neighboring gene mitochondrial fission factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
collagen alpha-4(IV) chain
Names
collagen, type IV, alpha 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052540.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    8974912..9039530 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015276987.4 → XP_015132473.2  collagen alpha-4(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZW30
    Conserved Domains (3) summary
    PRK07764
    Location:1078 → 1258
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:679 → 1060
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl02467
    Location:1453 → 1560
    C4; C-terminal tandem repeated domain in type 4 procollagen

  2. XM_025153677.3 → XP_025009445.2  collagen alpha-4(IV) chain isoform X2

    UniProtKB/TrEMBL
    A0A8V0ZNU4
    Related
    ENSGALP00010035078.1, ENSGALT00010057800.1
    Conserved Domains (4) summary
    PRK07764
    Location:1078 → 1258
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    PRK14086
    Location:1178 → 1352
    dnaA; chromosomal replication initiator protein DnaA
    pfam09606
    Location:679 → 1060
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl02467
    Location:1450 → 1557
    C4; C-terminal tandem repeated domain in type 4 procollagen

  3. XM_015276986.4 → XP_015132472.2  collagen alpha-4(IV) chain isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZW30
    Related
    ENSGALP00010035072.1, ENSGALT00010057791.1
    Conserved Domains (3) summary
    PRK07764
    Location:1078 → 1258
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:679 → 1060
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl02467
    Location:1453 → 1560
    C4; C-terminal tandem repeated domain in type 4 procollagen

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052581.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    8776407..8841037 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040679287.2 → XP_040535221.1  collagen alpha-4(IV) chain isoform X1

    Conserved Domains (3) summary
    PRK07764
    Location:1078 → 1258
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:679 → 1060
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl02467
    Location:1453 → 1560
    C4; C-terminal tandem repeated domain in type 4 procollagen

  2. XM_040679288.2 → XP_040535222.1  collagen alpha-4(IV) chain isoform X2

    Conserved Domains (4) summary
    PRK07764
    Location:1078 → 1258
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    PRK14086
    Location:1178 → 1352
    dnaA; chromosomal replication initiator protein DnaA
    pfam09606
    Location:679 → 1060
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl02467
    Location:1450 → 1557
    C4; C-terminal tandem repeated domain in type 4 procollagen

  3. XM_040679286.2 → XP_040535220.1  collagen alpha-4(IV) chain isoform X1

    Conserved Domains (3) summary
    PRK07764
    Location:1078 → 1258
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam09606
    Location:679 → 1060
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    cl02467
    Location:1453 → 1560
    C4; C-terminal tandem repeated domain in type 4 procollagen
Nucleotide Protein
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