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SEMA5B semaphorin 5B [ Gallus gallus (chicken) ]

Gene ID: 424248, updated on 3-Apr-2024

Summary

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Symbol
SEMA5Bprovided by CGNC
Full Name
semaphorin 5Bprovided by CGNC
Primary source
CGNC:8881
See related
Ensembl:ENSGALG00010018458
Gene type
protein coding
RefSeq status
MODEL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
29
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 7 NC_052538.1 (26164391..26416599, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 7 NC_052579.1 (26080173..26330881, complement)

Chromosome 7 - NC_052538.1Genomic Context describing neighboring genes Neighboring gene HSPB1 associated protein 1 Neighboring gene disrupted in renal carcinoma 2 Neighboring gene protein disulfide isomerase family A member 5 Neighboring gene SEC22 homolog A, vesicle trafficking protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Semaphorin 5B is a repellent cue for sensory afferents projecting into the developing spinal cord. Liu RQ, et al. Development, 2014 May. PMID 24718987

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chemorepellent activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables semaphorin receptor binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon extension IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of axon extension involved in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neural crest cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of cell migration IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in semaphorin-plexin signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
semaphorin-5B
Names
sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052538.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    26164391..26416599 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040704228.2 → XP_040560162.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZDH8
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  2. XM_040704230.1 → XP_040560164.1  semaphorin-5B isoform X4

    UniProtKB/TrEMBL
    A0A1D5PYV3, A0A8V0Z000
    Related
    ENSGALP00010026578.1, ENSGALT00010044638.1
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  3. XM_015289991.4 → XP_015145477.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZDH8
    Related
    ENSGALP00010026589.1, ENSGALT00010044649.1
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  4. XM_004942929.5 → XP_004942986.1  semaphorin-5B isoform X2

    UniProtKB/TrEMBL
    A0A1D5PWJ8, A0A8V0Z000
    Related
    ENSGALP00010026593.1, ENSGALT00010044656.1
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  5. XM_040704229.1 → XP_040560163.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZDH8
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  6. XM_040704227.2 → XP_040560161.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZDH8
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  7. XM_015289990.4 → XP_015145476.2  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  8. XM_046943776.1 → XP_046799732.1  semaphorin-5B isoform X1

  9. XM_004942927.5 → XP_004942984.2  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  10. XM_040704225.2 → XP_040560159.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  11. XM_015289989.4 → XP_015145475.2  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  12. XM_040704226.2 → XP_040560160.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  13. XM_015289993.4 → XP_015145479.1  semaphorin-5B isoform X5

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:798 → 850
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052579.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    26080173..26330881 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040676023.2 → XP_040531957.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZDH8
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  2. XM_040676026.2 → XP_040531960.1  semaphorin-5B isoform X4

    UniProtKB/TrEMBL
    A0A1D5PYV3, A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  3. XM_040676021.2 → XP_040531955.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZDH8
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  4. XM_040676020.2 → XP_040531954.1  semaphorin-5B isoform X2

    UniProtKB/TrEMBL
    A0A1D5PWJ8, A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  5. XM_040676024.1 → XP_040531958.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZDH8
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  6. XM_040676022.2 → XP_040531956.1  semaphorin-5B isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZDH8
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat

  7. XM_040676015.2 → XP_040531949.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  8. XM_046922164.1 → XP_046778120.1  semaphorin-5B isoform X1

  9. XM_040676018.2 → XP_040531952.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  10. XM_040676016.2 → XP_040531950.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  11. XM_040676017.2 → XP_040531951.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  12. XM_040676019.2 → XP_040531953.1  semaphorin-5B isoform X1

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:855 → 907
    TSP1; Thrombospondin type 1 repeats
    smart00423
    Location:497 → 534
    PSI; domain found in Plexins, Semaphorins and Integrins

  13. XM_040676027.2 → XP_040531961.1  semaphorin-5B isoform X5

    UniProtKB/TrEMBL
    A0A8V0Z000
    Conserved Domains (3) summary
    cd11264
    Location:60 → 496
    Sema_5B; The Sema domain, a protein interacting module, of semaphorin 5B (Sema5B)
    smart00209
    Location:798 → 850
    TSP1; Thrombospondin type 1 repeats
    pfam01437
    Location:497 → 544
    PSI; Plexin repeat
Nucleotide Protein Strain
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