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sod superoxide dismutase [ Haloquadratum walsbyi DSM 16790 ]

Gene ID: 4194704, updated on 7-May-2024

Summary

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Gene symbol
sod
Gene description
superoxide dismutase
Locus tag
HQ_RS07465
Gene type
protein coding
Organism
Haloquadratum walsbyi DSM 16790 (strain: DSM 16790 = HBSQ001)
Lineage
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloferacaceae; Haloquadratum
Old locus tag
HQ2461A; HQ_2461A
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Genomic context

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Sequence:
NC_008212.1 (1706234..1706833, complement)

NC_008212.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene IS4-like element ISHwa2 family transposase Neighboring gene DUF2237 domain-containing protein Neighboring gene deoxyribodipyrimidine photo-lyase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_008212.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Characterization of paralogous and orthologous members of the superoxide dismutase gene family from genera of the halophilic archaebacteria. Joshi P, et al. J Bacteriol, 1993 Mar. PMID 8449865, Free PMC Article
  2. Purification of a manganese-containing superoxide dismutase from Halobacterium halobium. Salin ML, et al. Arch Biochem Biophys, 1988 Feb 1. PMID 3341765
  3. Superoxide dismutase from the extremely halophilic archaebacterium Halobacterium cutirubrum. May BP, et al. J Bacteriol, 1987 Apr. PMID 3104309, Free PMC Article
  4. The genome of the square archaeon Haloquadratum walsbyi : life at the limits of water activity. Bolhuis H, et al. BMC Genomics, 2006 Jul 4. PMID 16820047, Free PMC Article

GeneRIFs: Gene References Into Functions

General protein information

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Preferred Names
superoxide dismutase
WP_011571698.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_008212.1 Reference assembly

    Range
    1706234..1706833 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_011571698.1 superoxide dismutase [Haloquadratum walsbyi]

    See identical proteins and their annotated locations for WP_011571698.1

    UniProtKB/TrEMBL
    G0LJ14, Q18HG3, U1N755
    Conserved Domains (3) summary
    COG0605
    Location:1 → 194
    SodA; Superoxide dismutase [Inorganic ion transport and metabolism]
    pfam00081
    Location:2 → 83
    Sod_Fe_N; Iron/manganese superoxide dismutases, alpha-hairpin domain
    pfam02777
    Location:90 → 190
    Sod_Fe_C; Iron/manganese superoxide dismutases, C-terminal domain
Nucleotide Protein
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