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MKLN1 muskelin 1 [ Sus scrofa (pig) ]

Gene ID: 414428, updated on 17-Aug-2024

Summary

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Official Symbol
MKLN1provided by VGNC
Official Full Name
muskelin 1provided by VGNC
Primary source
VGNC:VGNC:90245
See related
Ensembl:ENSSSCG00000016549
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 4.3), ovary (RPKM 4.3) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 18
Exon count:
25
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 18 NC_010460.4 (17493806..17832519, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 18 NC_010460.3 (18593094..18776077, complement)

Chromosome 18 - NC_010460.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110257603 Neighboring gene uncharacterized LOC106508206 Neighboring gene uncharacterized LOC110257585 Neighboring gene podocalyxin like Neighboring gene uncharacterized LOC106506781 Neighboring gene uncharacterized LOC110257572 Neighboring gene microRNA mir-29b-1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Identification of maternal mRNAs in porcine parthenotes at the 2-cell stage: a comparison with the blastocyst stage. Hwang KC, et al. Mol Reprod Dev, 2005 Mar. PMID 15625692

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
muskelin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010460.4 Reference Sscrofa11.1 Primary Assembly

    Range
    17493806..17832519 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021078931.1 → XP_020934590.1  muskelin isoform X3

    UniProtKB/TrEMBL
    A0A287A8I3, A0A4X1VVN1, A0A8D0URA0, A0A8D1KUI0
    Related
    ENSSSCP00000040191.1, ENSSSCT00000060927.3
    Conserved Domains (5) summary
    smart00668
    Location:179 → 231
    CTLH; C-terminal to LisH motif
    PLN02153
    Location:280 → 448
    PLN02153; epithiospecifier protein
    sd00038
    Location:244 → 296
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:7 → 180
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:255 → 307
    Kelch_3; Galactose oxidase, central domain

  2. XM_021078932.1 → XP_020934591.1  muskelin isoform X3

    UniProtKB/TrEMBL
    A0A287A8I3, A0A4X1VVN1, A0A8D0URA0, A0A8D1KUI0
    Conserved Domains (5) summary
    smart00668
    Location:179 → 231
    CTLH; C-terminal to LisH motif
    PLN02153
    Location:280 → 448
    PLN02153; epithiospecifier protein
    sd00038
    Location:244 → 296
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:7 → 180
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:255 → 307
    Kelch_3; Galactose oxidase, central domain

  3. XM_021078930.1 → XP_020934589.1  muskelin isoform X2

    UniProtKB/TrEMBL
    A0A8D0URA0, A0A8D1MU26, A0A8D1S4P0
    Conserved Domains (4) summary
    sd00038
    Location:247 → 299
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:10 → 183
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:258 → 310
    Kelch_3; Galactose oxidase, central domain
    cl26061
    Location:283 → 451
    PLN02193; nitrile-specifier protein

  4. XM_003134667.4 → XP_003134715.1  muskelin isoform X1

    See identical proteins and their annotated locations for XP_003134715.1

    UniProtKB/TrEMBL
    A0A480JKX5, A0A4X1VWJ7, A0A8D0X7N1, A0A8D1BH72
    Related
    ENSSSCP00000067152.1, ENSSSCT00000068602.2
    Conserved Domains (5) summary
    smart00668
    Location:206 → 258
    CTLH; C-terminal to LisH motif
    PLN02153
    Location:307 → 475
    PLN02153; epithiospecifier protein
    sd00038
    Location:271 → 323
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:12 → 207
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:282 → 334
    Kelch_3; Galactose oxidase, central domain

  5. XM_021078935.1 → XP_020934594.1  muskelin isoform X5

    Conserved Domains (3) summary
    PLN02153
    Location:100 → 268
    PLN02153; epithiospecifier protein
    sd00038
    Location:64 → 116
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:75 → 127
    Kelch_3; Galactose oxidase, central domain

  6. XM_021078933.1 → XP_020934592.1  muskelin isoform X4

    UniProtKB/TrEMBL
    A0A4X1VUB0, A0A8D0URA0
    Conserved Domains (5) summary
    smart00668
    Location:114 → 166
    CTLH; C-terminal to LisH motif
    PLN02153
    Location:215 → 383
    PLN02153; epithiospecifier protein
    sd00038
    Location:179 → 231
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:1 → 115
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:190 → 242
    Kelch_3; Galactose oxidase, central domain

  7. XM_013990796.2 → XP_013846250.1  muskelin isoform X4

    UniProtKB/TrEMBL
    A0A4X1VUB0, A0A8D0URA0
    Conserved Domains (5) summary
    smart00668
    Location:114 → 166
    CTLH; C-terminal to LisH motif
    PLN02153
    Location:215 → 383
    PLN02153; epithiospecifier protein
    sd00038
    Location:179 → 231
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:1 → 115
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:190 → 242
    Kelch_3; Galactose oxidase, central domain

  8. XM_021078934.1 → XP_020934593.1  muskelin isoform X4

    UniProtKB/TrEMBL
    A0A4X1VUB0, A0A8D0URA0
    Conserved Domains (5) summary
    smart00668
    Location:114 → 166
    CTLH; C-terminal to LisH motif
    PLN02153
    Location:215 → 383
    PLN02153; epithiospecifier protein
    sd00038
    Location:179 → 231
    Kelch; KELCH repeat [structural motif]
    pfam06588
    Location:1 → 115
    Muskelin_N; Muskelin N-terminus
    pfam13415
    Location:190 → 242
    Kelch_3; Galactose oxidase, central domain

  9. XM_021078936.1 → XP_020934595.1  muskelin isoform X5

    Conserved Domains (3) summary
    PLN02153
    Location:100 → 268
    PLN02153; epithiospecifier protein
    sd00038
    Location:64 → 116
    Kelch; KELCH repeat [structural motif]
    pfam13415
    Location:75 → 127
    Kelch_3; Galactose oxidase, central domain
Nucleotide Protein
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