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LOC409347 U4/U6.U5 tri-snRNP-associated protein 1 [ Apis mellifera (honey bee) ]

Gene ID: 409347, updated on 10-May-2024

Summary

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Gene symbol
LOC409347
Gene description
U4/U6.U5 tri-snRNP-associated protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB51495
Orthologs
fruit fly all
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Genomic context

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See LOC409347 in Genome Data Viewer
Location:
chromosome: LG3
Exon count:
12
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG3 NC_037640.1 (4871101..4875542)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG3 NC_007072.3 (3439755..3444144, complement)

Linkage Group LG3 - NC_037640.1Genomic Context describing neighboring genes Neighboring gene UPF0183 protein CG7083 Neighboring gene phosphoenolpyruvate carboxykinase Neighboring gene uncharacterized LOC107964173 Neighboring gene uncharacterized LOC552399 Neighboring gene PTB_TBC1D1_like and TBC domain-containing protein plx Neighboring gene uncharacterized LOC102655237 Neighboring gene elongator complex protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  2. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  3. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA cis splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in maturation of 5S rRNA IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
U4/U6.U5 tri-snRNP-associated protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037640.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    4871101..4875542
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_392863.7 → XP_392863.3  U4/U6.U5 tri-snRNP-associated protein 1

    UniProtKB/TrEMBL
    A0A7M7TF02, A0A8B9AZ27
    Conserved Domains (1) summary
    pfam03343
    Location:96 → 694
    SART-1; SART-1 family

RNA

  1. XR_003304222.1 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials