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Stip Sip1/TFIP11 interacting protein [ Apis mellifera (honey bee) ]

Gene ID: 408611, updated on 10-May-2024

Summary

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Gene symbol
Stip
Gene description
Sip1/TFIP11 interacting protein
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Apis mellifera
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Hymenoptera; Apocrita; Aculeata; Apoidea; Anthophila; Apidae; Apis
Also known as
GB11515; GB51822
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: LG1
Exon count:
10
Annotation release Status Assembly LG Location
104 current Amel_HAv3.1 (GCF_003254395.2) LG1 NC_037638.1 (6843898..6854814, complement)
103 previous assembly Amel_4.5 (GCF_000002195.4) LG1 NC_007070.3 (7749223..7760044)

Linkage Group LG1 - NC_037638.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC725775 Neighboring gene uncharacterized LOC100577384 Neighboring gene uncharacterized LOC100576726 Neighboring gene flotillin-2 Neighboring gene glucose dehydrogenase [FAD, quinone] Neighboring gene uncharacterized LOC113219271 Neighboring gene glucose dehydrogenase [FAD, quinone]

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Adaptive evolution of a key gene affecting queen and worker traits in the honey bee, Apis mellifera. Kent CF, et al. Mol Ecol, 2011 Dec. PMID 21981322
  2. Characterization of STIP, a multi-domain nuclear protein, highly conserved in metazoans, and essential for embryogenesis in Caenorhabditis elegans. Ji Q, et al. Exp Cell Res, 2007 Apr 15. PMID 17289020
  3. Insights into social insects from the genome of the honeybee Apis mellifera. Honeybee Genome Sequencing Consortium. Nature, 2006 Oct 26. PMID 17073008, Free PMC Article
  4. ProtoBee: hierarchical classification and annotation of the honey bee proteome. Kaplan N, et al. Genome Res, 2006 Nov. PMID 17065614, Free PMC Article
  5. Finding the missing honey bee genes: lessons learned from a genome upgrade. Elsik CG, et al. BMC Genomics, 2014 Jan 30. PMID 24479613, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables flavin adenine dinucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables oxidoreductase activity, acting on CH-OH group of donors IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex disassembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
Sip1/TFIP11 interacting protein; sip1/TFIP11 interacting protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080205.1 → NP_001073674.1  Sip1/TFIP11 interacting protein

    See identical proteins and their annotated locations for NP_001073674.1

    Status: PROVISIONAL

    Source sequence(s)
    DQ342041
    UniProtKB/TrEMBL
    A0A8B6WZ59, A0A8U0WQK7, A1XDA8
    Conserved Domains (3) summary
    pfam01585
    Location:158 → 202
    G-patch; G-patch domain
    pfam07842
    Location:391 → 658
    GCFC; GC-rich sequence DNA-binding factor-like protein
    pfam12457
    Location:3 → 82
    TIP_N; Tuftelin interacting protein N terminal

RefSeqs of Annotated Genomes: Apis mellifera Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Amel_HAv3.1 Primary Assembly

Genomic

  1. NC_037638.1 Reference Amel_HAv3.1 Primary Assembly

    Range
    6843898..6854814 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016910826.2 → XP_016766315.1  sip1/TFIP11 interacting protein isoform X1

    UniProtKB/TrEMBL
    A0A7M7IG12, A0A8B7KH98
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases