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ube2q2 ubiquitin-conjugating enzyme E2Q family member 2 [ Danio rerio (zebrafish) ]

Gene ID: 406260, updated on 27-Mar-2024

Summary

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Official Symbol
ube2q2provided by ZNC
Official Full Name
ubiquitin-conjugating enzyme E2Q family member 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1919
See related
Ensembl:ENSDARG00000013990 AllianceGenome:ZFIN:ZDB-GENE-040426-1919
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56219; wu:fi34a03
Summary
Predicted to enable ubiquitin conjugating enzyme activity. Predicted to be involved in protein polyubiquitination. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in nucleus. Orthologous to several human genes including UBE2Q2 (ubiquitin conjugating enzyme E2 Q2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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See ube2q2 in Genome Data Viewer
Location:
chromosome: 25
Exon count:
13
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 25 NC_007136.7 (29427852..29463878, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 25 NC_007136.6 (28984845..29020871, complement)

Chromosome 25 - NC_007136.7Genomic Context describing neighboring genes Neighboring gene UDP glucuronosyltransferase 5 family, polypeptide A4 Neighboring gene UDP glucuronosyltransferase 5 family, polypeptide A2 Neighboring gene UDP glucuronosyltransferase 5 family, polypeptide A1 Neighboring gene interleukin 17 receptor E-like Neighboring gene kelch repeat and BTB domain containing 13b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The zebrafish gene map defines ancestral vertebrate chromosomes. Woods IG, et al. Genome Res, 2005 Sep. PMID 16109975, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables ubiquitin conjugating enzyme activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in protein polyubiquitination IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
ubiquitin-conjugating enzyme E2 Q2
NP_001315128.1
NP_001315130.1
NP_001315132.1
NP_001315133.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001328199.1 → NP_001315128.1  ubiquitin-conjugating enzyme E2 Q2 isoform 1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (1).
    Source sequence(s)
    CU179703, CU469568
    UniProtKB/TrEMBL
    A0A8M1P4I9, X1WFM4
    Related
    ENSDARP00000129028.1, ENSDART00000155676.3

  2. NM_001328201.1 → NP_001315130.1  ubiquitin-conjugating enzyme E2 Q2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    CU179703, CU469568
    UniProtKB/TrEMBL
    A0A8M1P3M6, E7F1U7
    Related
    ENSDARP00000109060.2, ENSDART00000124645.3

  3. NM_001328203.1 → NP_001315132.1  ubiquitin-conjugating enzyme E2 Q2 isoform 3

    Status: VALIDATED

    Source sequence(s)
    CU179703, CU469568
    UniProtKB/TrEMBL
    A0A2R8QLP1, A0A8M1P8W9
    Related
    ENSDARP00000153455.1, ENSDART00000192593.1

  4. NM_001328204.1 → NP_001315133.1  ubiquitin-conjugating enzyme E2 Q2 isoform 4

    Status: VALIDATED

    Source sequence(s)
    CU179703, CU469568
    UniProtKB/TrEMBL
    A0A2R8Q670, A0A8M1P4J4
    Related
    ENSDARP00000149600.1, ENSDART00000181055.1

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007136.7 Reference GRCz11 Primary Assembly

    Range
    29427852..29463878 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_212987.1: Suppressed sequence

    Description
    NM_212987.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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