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DEFB110 defensin, beta 110 locus [ Sus scrofa (pig) ]

Gene ID: 404702, updated on 16-Nov-2023

Summary

Gene symbol
DEFB110
Gene description
defensin, beta 110 locus
See related
Ensembl:ENSSSCG00000001743
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
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Genomic context

Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (44019705..44024322, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (50410268..50414884, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene beta-defensin 110-like Neighboring gene defensin beta 113 Neighboring gene defensin beta 112 Neighboring gene transcription factor AP-2 delta

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables CCR6 chemokine receptor binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables chemoattractant activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in cell chemotaxis IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in defense response to bacterium IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in innate immune response IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
beta-defensin 110
Names
prepro-beta-defensin 4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_214443.1NP_999608.1  beta-defensin 110 precursor

    See identical proteins and their annotated locations for NP_999608.1

    Status: PROVISIONAL

    Source sequence(s)
    AY460576
    UniProtKB/TrEMBL
    A0A4X1UVV7, A0A8D0MKY5, A0A8D1VTV9, K7GNA0, Q6SC67
    Related
    ENSSSCP00000029351.2, ENSSSCT00000033386.4
    Conserved Domains (1) summary
    pfam13841
    Location:3464
    Defensin_beta_2; Beta defensin

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    44019705..44024322 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)