lhfpl2a LHFPL tetraspan subfamily member 2a [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: lhfpl2aprovided by ZNC
Official Full Name: LHFPL tetraspan subfamily member 2aprovided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-1839
See related: Ensembl:ENSDARG00000009653 AllianceGenome:ZFIN:ZDB-GENE-040426-1839
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: lhfpl2; zgc:77456
Summary: Predicted to be involved in development of primary female sexual characteristics; development of primary male sexual characteristics; and positive regulation of fertilization. Predicted to act upstream of or within single fertilization. Predicted to be integral component of membrane. Predicted to be active in membrane. Orthologous to human LHFPL2 (LHFPL tetraspan subfamily member 2). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: all
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Genomic context

Location:: chromosome: 21

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	21	NC_007132.7 (301002..327032, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	Unplaced Scaffold	NW_008805479.1 (927..1393)

Chromosome 21 - NC_007132.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

G47317 (e-PCR)
- UniSTS:108098

G40297 (e-PCR)
- UniSTS:67498

fb79g06.y1 (e-PCR)
- UniSTS:203452

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in development of primary female sexual characteristics	ISS Inferred from Sequence or Structural Similarity more info
involved_in development of primary male sexual characteristics	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of fertilization	ISS Inferred from Sequence or Structural Similarity more info
acts_upstream_of_or_within single fertilization	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in membrane	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: LHFPL tetraspan subfamily member 2a protein

Names: lipoma HMGIC fusion partner-like 2 protein pseudogene; lipoma HMGIC fusion partner-like 2a

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_205663.1 → NP_991226.1 LHFPL tetraspan subfamily member 2a protein

See identical proteins and their annotated locations for NP_991226.1

Status: PROVISIONAL

Source sequence(s)

BC065671

UniProtKB/Swiss-Prot

Q6P0C6

UniProtKB/TrEMBL

A0A8M9P387

Related

ENSDARP00000126208.2, ENSDART00000151613.2

Conserved Domains (1) summary

pfam10242
Location:9 → 201

L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007132.7 Reference GRCz11 Primary Assembly

Range

301002..327032 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_021468792.2 → XP_021324467.1 LHFPL tetraspan subfamily member 2a protein isoform X1

UniProtKB/Swiss-Prot

Q6P0C6

UniProtKB/TrEMBL

A0A8M9P387

Conserved Domains (1) summary

pfam10242
Location:9 → 201

L_HMGIC_fpl; Lipoma HMGIC fusion partner-like protein