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znf143.S zinc finger protein 143 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 399467, updated on 11-Apr-2024

Summary

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Official Symbol
znf143.S
Official Full Name
zinc finger protein 143 S homeolog
Primary source
Xenbase:XB-GENE-1012509
Locus tag
XELAEV_18024553mg
See related
EnsemblRapid:ENSXLAG00005019778
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
staf; znf143; znf143.L
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Genomic context

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See znf143.S in Genome Data Viewer
Location:
chromosome: 4S
Exon count:
16
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 4S NC_054378.1 (18921050..18948954, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 4S NC_030731.1 (18333424..18361277, complement)

Chromosome 4S - NC_054378.1Genomic Context describing neighboring genes Neighboring gene switching B cell complex subunit SWAP70 S homeolog Neighboring gene WEE1 G2 checkpoint kinase S homeolog Neighboring gene transmembrane protein 41B S homeolog Neighboring gene small nucleolar RNA SNORA23 Neighboring gene importin 7 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Staf, a novel zinc finger protein that activates the RNA polymerase III promoter of the selenocysteine tRNA gene. Schuster C, et al. EMBO J, 1995 Aug 1. PMID 7641696, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
  
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
zinc finger protein 143
Names
Selenocysteine tRNA gene transcription-activating factor
selenocysteine tRNA activating factor
zinc finger protein 143 L homeolog
NP_001084373.1
XP_018115025.1
XP_018115026.1
XP_018115027.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001090904.1 → NP_001084373.1  zinc finger protein 143

    See identical proteins and their annotated locations for NP_001084373.1

    Status: PROVISIONAL

    Source sequence(s)
    X84996
    UniProtKB/Swiss-Prot
    Q6IR49, Q91853
    Related
    ENSXLAP00005058193.1, ENSXLAT00005059548.1
    Conserved Domains (4) summary
    COG5048
    Location:292 → 350
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:267 → 289
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:341 → 368
    zf-H2C2_2; Zinc-finger double domain
    pfam15909
    Location:327 → 442
    zf-C2H2_8; C2H2-type zinc ribbon

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054378.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    18921050..18948954 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018259538.2 → XP_018115027.1  zinc finger protein 143 isoform X3

    UniProtKB/Swiss-Prot
    Q6IR49, Q91853
    Related
    ENSXLAP00005058149.1, ENSXLAT00005059507.1

  2. XM_018259537.2 → XP_018115026.1  zinc finger protein 143 isoform X2

    UniProtKB/TrEMBL
    A0A8J0UZQ1, A0A974CXX5
    Related
    ENSXLAP00005058173.1, ENSXLAT00005059530.1

  3. XM_018259536.2 → XP_018115025.1  zinc finger protein 143 isoform X1

    UniProtKB/TrEMBL
    A0A8J0V4F1, A0A974CXX5
    Related
    ENSXLAP00005058184.1, ENSXLAT00005059541.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91853.2 GenPept UniProtKB/Swiss-Prot:Q91853

Gene LinkOut

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