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ncaph.S non-SMC condensin I complex subunit H S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 398069, updated on 2-May-2024

Summary

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Official Symbol
ncaph.S
Official Full Name
non-SMC condensin I complex subunit H S homeolog
Primary source
Xenbase:XB-GENE-5738491
Locus tag
XELAEV_18020309mg
See related
EnsemblRapid:ENSXLAG00005016426
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
caph; brrn1; cap-h; ncaph
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Genomic context

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See ncaph.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
18
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (28303434..28323803, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (27146046..27166505, complement)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene lectin, mannose-binding 2-like S homeolog Neighboring gene neuralized E3 ubiquitin protein ligase 3 S homeolog Neighboring gene nucleoporin 133kDa S homeolog Neighboring gene small nuclear ribonucleoprotein, U5 200kDa subunit S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. 13S condensin actively reconfigures DNA by introducing global positive writhe: implications for chromosome condensation. Kimura K, et al. Cell, 1999 Jul 23. PMID 10428035
  2. Phosphorylation and activation of 13S condensin by Cdc2 in vitro. Kimura K, et al. Science, 1998 Oct 16. PMID 9774278
  3. Condensins, chromosome condensation protein complexes containing XCAP-C, XCAP-E and a Xenopus homolog of the Drosophila Barren protein. Hirano T, et al. Cell, 1997 May 16. PMID 9160743
  4. Differential contributions of condensin I and condensin II to mitotic chromosome architecture in vertebrate cells. Ono T, et al. Cell, 2003 Oct 3. PMID 14532007
  5. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cell division IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within chromosome condensation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic chromosome condensation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in chromosome IEA
Inferred from Electronic Annotation
more info
  
part_of condensin complex IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol TAS
Traceable Author Statement
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
condensin complex subunit 2
Names
13S condensin XCAP-H subunit
barren homolog
chromosome assembly protein xCAP-H
chromosome-associated protein H
non-SMC condensin I complex, subunit H

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001088349.1 → NP_001081818.1  condensin complex subunit 2

    See identical proteins and their annotated locations for NP_001081818.1

    Status: PROVISIONAL

    Source sequence(s)
    U90125
    UniProtKB/Swiss-Prot
    O13067
    UniProtKB/TrEMBL
    A0A974HQD5
    Related
    ENSXLAP00005048377.1, ENSXLAT00005049492.1
    Conserved Domains (1) summary
    pfam05786
    Location:32 → 695
    Cnd2; Condensin complex subunit 2

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    28303434..28323803 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018254138.2 → XP_018109627.1  condensin complex subunit 2 isoform X1

    UniProtKB/TrEMBL
    A0A8J0UUC0, A0A974HQD5
    Related
    ENSXLAP00005048405.1, ENSXLAT00005049520.1
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O13067.1 GenPept UniProtKB/Swiss-Prot:O13067

Gene LinkOut

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Molecular Biology Databases
Research Materials