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AIF1 allograft inflammatory factor 1 [ Sus scrofa (pig) ]

Gene ID: 397271, updated on 5-Mar-2024

Summary

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Official Symbol
AIF1provided by VGNC
Official Full Name
allograft inflammatory factor 1provided by VGNC
Primary source
VGNC:VGNC:85197
See related
Ensembl:ENSSSCG00000032341
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
AIF-1
Expression
Biased expression in spleen (RPKM 234.7), lung (RPKM 90.2) and 3 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (23711752..23731191)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (27520797..27540237, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene tumor necrosis factor Neighboring gene leukocyte specific transcript 1 Neighboring gene lymphotoxin beta Neighboring gene natural cytotoxicity triggering receptor 3 Neighboring gene proline rich coiled-coil 2A Neighboring gene BAG cochaperone 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Preparation and identification of monoclonal antibodies against daintain. Fu K, et al. Hybridoma (Larchmt), 2006 Apr. PMID 16704311
  2. Effects of malnutrition on the expression of daintain/AIF-1 in the gut mucosa of pigs. Mentschel J, et al. J Vet Med A Physiol Pathol Clin Med, 2002 May. PMID 12069259
  3. The allograft inflammatory factor-1 family of proteins. Deininger MH, et al. FEBS Lett, 2002 Mar 13. PMID 11943136
  4. PEDE (Pig EST Data Explorer) has been expanded into Pig Expression Data Explorer, including 10 147 porcine full-length cDNA sequences. Uenishi H, et al. Nucleic Acids Res, 2007 Jan. PMID 17145712, Free PMC Article
  5. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin filament binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ruffle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in actin filament IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in ruffle membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
allograft inflammatory factor 1
Names
daintain

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001129950.1 → NP_001123422.1  allograft inflammatory factor 1

    See identical proteins and their annotated locations for NP_001123422.1

    Status: PROVISIONAL

    Source sequence(s)
    EU282338
    UniProtKB/Swiss-Prot
    P81076
    UniProtKB/TrEMBL
    A0A4X1VFT5, A5D9N3
    Related
    ENSSSCP00000036374.1, ENSSSCT00000061790.2
    Conserved Domains (1) summary
    cl08302
    Location:48 → 110
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    23711752..23731191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013977627.2 → XP_013833081.1  allograft inflammatory factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D0PI58, A0A8D1Y7B3, Q9GK84
    Related
    ENSSSCP00000073869.1, ENSSSCT00000069637.2
    Conserved Domains (1) summary
    cl08302
    Location:3 → 56
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

  2. XM_021098301.1 → XP_020953960.1  allograft inflammatory factor 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D0PI58, A0A8D1Y7B3, Q9GK84
    Conserved Domains (1) summary
    cl08302
    Location:3 → 56
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P81076.1 GenPept UniProtKB/Swiss-Prot:P81076

Gene LinkOut

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