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tomm40 translocase of outer mitochondrial membrane 40 homolog [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 394730, updated on 25-Apr-2024

Summary

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Official Symbol
tomm40provided by Xenbase
Official Full Name
translocase of outer mitochondrial membrane 40 homologprovided by Xenbase
Primary source
Xenbase:XB-GENE-995150
See related
Ensembl:ENSXETG00000019319
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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See tomm40 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
11
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 7 NC_030683.2 (109248602..109258703)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 7 NC_030683.1 (101350506..101360707)

Chromosome 7 - NC_030683.2Genomic Context describing neighboring genes Neighboring gene basal cell adhesion molecule (Lutheran blood group) Neighboring gene nectin cell adhesion molecule 2 Neighboring gene apolipoprotein E Neighboring gene apolipoprotein C-I

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC75995

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables porin activity IEA
Inferred from Electronic Annotation
more info
  
enables protein transmembrane transporter activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables protein transmembrane transporter activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within monoatomic ion transport IEA
Inferred from Electronic Annotation
more info
  
involved_in protein import into mitochondrial matrix IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within protein import into mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein targeting to mitochondrion ISS
Inferred from Sequence or Structural Similarity
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in mitochondrial outer membrane IEA
Inferred from Electronic Annotation
more info
  
part_of mitochondrial outer membrane translocase complex IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
part_of pore complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
mitochondrial import receptor subunit TOM40 homolog
Names
mitochondrial outer membrane protein TOM40
translocase of outer membrane 40 kDa subunit homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_203794.1 → NP_989125.1  mitochondrial import receptor subunit TOM40 homolog

    See identical proteins and their annotated locations for NP_989125.1

    Status: PROVISIONAL

    Source sequence(s)
    BC061406
    UniProtKB/Swiss-Prot
    Q6P825
    UniProtKB/TrEMBL
    F6V8B8, Q28FD5
    Conserved Domains (1) summary
    cd07305
    Location:52 → 336
    Porin3_Tom40; Translocase of outer mitochondrial membrane 40 (Tom40)

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030683.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    109248602..109258703
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012956650.3 → XP_012812104.1  mitochondrial import receptor subunit TOM40 homolog isoform X1

    UniProtKB/TrEMBL
    A0A803KJF9, F6V8B8, Q28FD5
    Related
    ENSXETP00000041847.4, ENSXETT00000041847.4
    Conserved Domains (1) summary
    cd07305
    Location:68 → 352
    Porin3_Tom40; Translocase of outer mitochondrial membrane 40 (Tom40)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q6P825.1 GenPept UniProtKB/Swiss-Prot:Q6P825

Gene LinkOut

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