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Pop4 POP4 ribonuclease P/MRP subunit [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38889, updated on 10-May-2024

Summary

Official Symbol
Pop4provided by FlyBase
Official Full Name
POP4 ribonuclease P/MRP subunitprovided by FlyBase
Primary source
FLYBASE:FBgn0035831
Locus tag
Dmel_CG8038
See related
AllianceGenome:FB:FBgn0035831
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-WO0172774.38; BcDNA:LD45688; CG8038; Dmel\CG8038; Rpp29
Summary
Predicted to enable rRNA primary transcript binding activity and ribonuclease P RNA binding activity. Predicted to be involved in rRNA processing and tRNA 5'-leader removal. Predicted to be part of nucleolar ribonuclease P complex and ribonuclease MRP complex. Orthologous to human POP4 (POP4 homolog, ribonuclease P/MRP subunit). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
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Genomic context

See Pop4 in Genome Data Viewer
Location:
66A21-66A22; 3-21 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (7977805..7978650, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (7970905..7971750, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Ribonuclease X25 Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Heterochromatin protein 4 Neighboring gene nemo Neighboring gene transfer RNA:Alanine-AGC 2-1 Neighboring gene antisense RNA:CR45867 Neighboring gene bip1

Genomic regions, transcripts, and products

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables rRNA primary transcript binding ISS
Inferred from Sequence or Structural Similarity
more info
 
enables ribonuclease P RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
 
enables ribonuclease P RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables ribonuclease P RNA binding ISS
Inferred from Sequence or Structural Similarity
more info
 
Process Evidence Code Pubs
involved_in RNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in rRNA processing IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in rRNA processing ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in tRNA 5'-leader removal IEA
Inferred from Electronic Annotation
more info
 
involved_in tRNA 5'-leader removal ISS
Inferred from Sequence or Structural Similarity
more info
 
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
 
involved_in tRNA processing ISS
Inferred from Sequence or Structural Similarity
more info
 
Component Evidence Code Pubs
part_of multimeric ribonuclease P complex ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of nucleolar ribonuclease P complex ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of ribonuclease MRP complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ribonuclease MRP complex IEA
Inferred from Electronic Annotation
more info
 
part_of ribonuclease MRP complex ISS
Inferred from Sequence or Structural Similarity
more info
 
part_of ribonuclease P complex IBA
Inferred from Biological aspect of Ancestor
more info
 
part_of ribonuclease P complex IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
POP4 ribonuclease P/MRP subunit
Names
CG8038-PA
Pop4-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    7977805..7978650 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_139911.3NP_648168.1  POP4 ribonuclease P/MRP subunit [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648168.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    C4XVM6, Q9VSC6
    Related
    FBpp0076478
    Conserved Domains (1) summary
    smart00538
    Location:111201
    POP4; A domain found in a protein subunit of human RNase MRP and RNase P ribonucleoprotein complexes and archaeal proteins