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Pad-1 Paddle-1 [ Neurospora crassa OR74A ]

Gene ID: 3872025, updated on 17-May-2024

Summary

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Gene symbol
Pad-1
Gene description
Paddle-1
Primary source
FungiDB:NCU03491
Locus tag
NCU03491
See related
VEuPathDB:NCU03491
Gene type
protein coding
RNA name
RNA splicing factor Pad-1
RefSeq status
PROVISIONAL
Organism
Neurospora crassa OR74A (strain: OR74A)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Sordariales; Sordariaceae; Neurospora
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Genomic context

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See Pad-1 in Genome Data Viewer
Location:
other: II
Exon count:
5
Sequence:
Chromosome: II; NC_026502.1 (498002..500940)

Linkage Group II - NC_026502.1Genomic Context describing neighboring genes Neighboring gene heterokaryon incompatibility- c Neighboring gene inositolphosphorylceramide-B C-26 hydroxylase Neighboring gene hypothetical protein Neighboring gene colonial-21

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_026502.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of the filamentous fungus Neurospora crassa. Galagan JE, et al. Nature, 2003 Apr 24. PMID 12712197

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
RNA splicing factor Pad-1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_026502.1 Reference assembly

    Range
    498002..500940
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_950785.2 → XP_955878.2  RNA splicing factor Pad-1 [Neurospora crassa OR74A]

    See identical proteins and their annotated locations for XP_955878.2

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q7RVN7, Q8X003, Q9Y7A8
    Conserved Domains (5) summary
    cd12283
    Location:184 → 256
    RRM1_RBM39_like; RNA recognition motif 1 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    cd12284
    Location:284 → 355
    RRM2_RBM23_RBM39; RNA recognition motif 2 in vertebrate RNA-binding protein RBM23, RBM39 and similar proteins
    cd12285
    Location:473 → 556
    RRM3_RBM39_like; RNA recognition motif 3 in vertebrate RNA-binding protein 39 (RBM39) and similar proteins
    TIGR01622
    Location:76 → 565
    SF-CC1; splicing factor, CC1-like family
    pfam15519
    Location:417 → 491
    RBM39linker; linker between RRM2 and RRM3 domains in RBM39 protein
Nucleotide Protein
Heading Accession and Version

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