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tubb.L tubulin beta class I L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380418, updated on 11-Apr-2024

Summary

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Official Symbol
tubb.L
Official Full Name
tubulin beta class I L homeolog
Primary source
Xenbase:XB-GENE-864839
Locus tag
XELAEV_18039222mg
See related
EnsemblRapid:ENSXLAG00005027674
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
XLOT; tubb; tubb5
Annotation information
Annotation category: partial on reference assembly
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Genomic context

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Location:
chromosome: 8L
Exon count:
4
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8L NC_054385.1 (66849154..66855437, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8L NC_030738.1 (53378749..53385032, complement)

Chromosome 8L - NC_054385.1Genomic Context describing neighboring genes Neighboring gene coiled-coil alpha-helical rod protein 1 L homeolog Neighboring gene mediator of DNA damage checkpoint 1 L homeolog Neighboring gene flotillin 1 L homeolog Neighboring gene RING finger protein 39-like L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Chfr interacts and colocalizes with TCTP to the mitotic spindle. Burgess A, et al. Oncogene, 2008 Sep 18. PMID 18504434
  2. Two distinct modes of DNMT1 recruitment ensure stable maintenance DNA methylation. Nishiyama A, et al. Nat Commun, 2020 Mar 6. PMID 32144273, Free PMC Article
  3. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC53125

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
  
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within microtubule cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within microtubule-based process IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within mitotic cell cycle IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
  
located_in microtubule IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tubulin beta chain
Names
beta5-tubulin
tubb beta-5
tubulin beta-1
tubulin beta-5 chain
tubulin, beta 5
tubulin, beta class I

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087257.1 → NP_001080726.1  tubulin beta chain

    See identical proteins and their annotated locations for NP_001080726.1

    Status: PROVISIONAL

    Source sequence(s)
    BC049004
    UniProtKB/Swiss-Prot
    Q91575
    UniProtKB/TrEMBL
    A0A974C423, A0A974H7Y3
    Related
    ENSXLAP00005082334.1, ENSXLAT00005083966.1
    Conserved Domains (1) summary
    PLN00220
    Location:1 → 429
    PLN00220; tubulin beta chain; Provisional

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054385.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    66849154..66855437 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q91575.1 GenPept UniProtKB/Swiss-Prot:Q91575

Gene LinkOut

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