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ap2b1.L adaptor related protein complex 2 subunit beta 1 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 380165, updated on 11-Apr-2024

Summary

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Official Symbol
ap2b1.L
Official Full Name
adaptor related protein complex 2 subunit beta 1 L homeolog
Primary source
Xenbase:XB-GENE-5871447
Locus tag
XELAEV_18012678mg
See related
EnsemblRapid:ENSXLAG00005001744
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ap2b1
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Genomic context

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Location:
chromosome: 2L
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 2L NC_054373.1 (97393268..97452073)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 2L NC_030726.1 (91654859..91713990)

Chromosome 2L - NC_054373.1Genomic Context describing neighboring genes Neighboring gene unc-45 myosin chaperone B L homeolog Neighboring gene schlafen family member 13 L homeolog Neighboring gene peroxisomal biogenesis factor 12 L homeolog Neighboring gene RAS like family 10 member B L homeolog Neighboring gene growth arrest specific 2 like 2 L homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Clone Names

  • MGC53044

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables clathrin binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within intracellular protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within protein transport IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of clathrin adaptor complex IEA
Inferred from Electronic Annotation
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
part_of membrane coat IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
adaptor related protein complex 2 subunit beta 1 L homeolog
Names
AP-2 complex subunit beta
adaptor related protein complex 2 beta 1 subunit L homeolog
adaptor-related protein complex 2, beta 1 subunit
beta2-Adaptin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001087004.1 → NP_001080473.1  adaptor related protein complex 2 subunit beta 1 L homeolog

    See identical proteins and their annotated locations for NP_001080473.1

    Status: PROVISIONAL

    Source sequence(s)
    BC043793
    UniProtKB/TrEMBL
    A0A974DN39, Q7ZYG7
    Related
    ENSXLAP00005005192.1, ENSXLAT00005005298.1
    Conserved Domains (5) summary
    smart00809
    Location:731 → 831
    Alpha_adaptinC2; Adaptin C-terminal domain
    smart01020
    Location:840 → 950
    B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
    pfam01602
    Location:11 → 534
    Adaptin_N; Adaptin N terminal region
    pfam12717
    Location:99 → 268
    Cnd1; non-SMC mitotic condensation complex subunit 1
    sd00044
    Location:51 → 75
    HEAT; HEAT repeat [structural motif]

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054373.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    97393268..97452073
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041580873.1 → XP_041436807.1  adaptor related protein complex 2 subunit beta 1 L homeolog isoform X1

    UniProtKB/TrEMBL
    A0A8J1M541, A0A974DN39
    Related
    ENSXLAP00005005190.1, ENSXLAT00005005296.1
    Conserved Domains (4) summary
    smart00809
    Location:738 → 838
    Alpha_adaptinC2; Adaptin C-terminal domain
    smart01020
    Location:847 → 958
    B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
    PTZ00429
    Location:2 → 715
    PTZ00429; beta-adaptin; Provisional
    sd00044
    Location:51 → 75
    HEAT; HEAT repeat [structural motif]

  2. XM_018244820.2 → XP_018100309.1  adaptor related protein complex 2 subunit beta 1 L homeolog isoform X3

    UniProtKB/TrEMBL
    A0A8J0UBP0, A0A974DN39
    Related
    ENSXLAP00005005191.1, ENSXLAT00005005297.1

  3. XM_041580874.1 → XP_041436808.1  adaptor related protein complex 2 subunit beta 1 L homeolog isoform X2

    UniProtKB/TrEMBL
    A0A1L8HFX3, A0A974DN23, A0A974DN39
    Conserved Domains (4) summary
    smart00809
    Location:738 → 838
    Alpha_adaptinC2; Adaptin C-terminal domain
    smart01020
    Location:847 → 957
    B2-adapt-app_C; Beta2-adaptin appendage, C-terminal sub-domain
    sd00044
    Location:51 → 75
    HEAT; HEAT repeat [structural motif]
    pfam01602
    Location:11 → 534
    Adaptin_N; Adaptin N terminal region
Nucleotide Protein Strain
Heading Accession and Version

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