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scarb2.L scavenger receptor class B member 2 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379798, updated on 11-Apr-2024

Summary

Official Symbol
scarb2.L
Official Full Name
scavenger receptor class B member 2 L homeolog
Primary source
Xenbase:XB-GENE-6254936
Locus tag
XELAEV_18005851mg
See related
EnsemblRapid:ENSXLAG00005033551
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
cd36l2; scarb2
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Genomic context

See scarb2.L in Genome Data Viewer
Location:
chromosome: 1L
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1L NC_054371.1 (86899382..86923201)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1L NC_030724.1 (75990643..76014462)

Chromosome 1L - NC_054371.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase, EF-hand calcium binding domain 2 L homeolog Neighboring gene nucleoporin 54kDa L homeolog Neighboring gene coiled-coil domain-containing protein 158 Neighboring gene carbohydrate-binding module family 20 containing L homeolog

Genomic regions, transcripts, and products

General gene information

Markers

Clone Names

  • MGC53174

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables scavenger receptor activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
acts_upstream_of_or_within protein targeting to lysosome IEA
Inferred from Electronic Annotation
more info
 
acts_upstream_of_or_within receptor-mediated endocytosis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in lysosome IEA
Inferred from Electronic Annotation
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
scavenger receptor class B member 2 L homeolog
Names
CD36 antigen (collagen type I receptor, thrombospondin receptor)-like 2
scavenger receptor class B, member 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086637.1NP_001080106.1  scavenger receptor class B member 2 L homeolog

    See identical proteins and their annotated locations for NP_001080106.1

    Status: PROVISIONAL

    Source sequence(s)
    BC045028
    UniProtKB/TrEMBL
    A0A974I314, Q7ZTL6
    Related
    ENSXLAP00005100270.1, ENSXLAT00005102225.1
    Conserved Domains (1) summary
    pfam01130
    Location:29458
    CD36; CD36 family

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054371.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    86899382..86923201
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)