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ubl7.S ubiquitin like 7 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379579, updated on 11-Apr-2024

Summary

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Official Symbol
ubl7.S
Official Full Name
ubiquitin like 7 S homeolog
Primary source
Xenbase:XB-GENE-955346
Locus tag
XELAEV_18020774mg
See related
EnsemblRapid:ENSXLAG00005008383
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
ubl7
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Genomic context

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See ubl7.S in Genome Data Viewer
Location:
chromosome: 3S
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (60303763..60316131)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (58906761..58919096)

Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene high mobility group 20A S homeolog Neighboring gene pseudopodium-enriched atypical kinase 1 S homeolog Neighboring gene uncharacterized LOC121402170 Neighboring gene immunoglobulin superfamily containing leucine-rich repeat 2 S homeolog Neighboring gene signaling receptor and transporter of retinol STRA6 S homeolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC69120

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ubiquitin like 7 S homeolog
Names
ubiquitin-like 7 (bone marrow stromal cell-derived)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086420.1 → NP_001079889.1  ubiquitin like 7 S homeolog

    See identical proteins and their annotated locations for NP_001079889.1

    Status: PROVISIONAL

    Source sequence(s)
    BC056105
    UniProtKB/TrEMBL
    A0A974HQY8, Q5XGW3, Q7T0P0
    Conserved Domains (2) summary
    cd01815
    Location:11 → 85
    BMSC_UbP_N; Ubiquitin-like domain of BMSC-UbP
    cd14326
    Location:338 → 367
    UBA_UBL7; UBA domain found in ubiquitin-like protein 7 (UBL7) and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    60303763..60316131
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_018254051.2 → XP_018109540.1  ubiquitin like 7 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GTB6, A0A974HR04, Q5XGW3
    Related
    ENSXLAP00005024177.1, ENSXLAT00005024885.1

  2. XM_018254054.2 → XP_018109543.1  ubiquitin like 7 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GTB6, A0A974HR04, Q5XGW3

  3. XM_018254053.2 → XP_018109542.1  ubiquitin like 7 S homeolog isoform X1

    UniProtKB/TrEMBL
    A0A1L8GTB6, A0A974HR04, Q5XGW3
Nucleotide Protein Strain
Heading Accession and Version

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