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sumo3.L small ubiquitin like modifier 3 L homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379449, updated on 11-Apr-2024

Summary

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Official Symbol
sumo3.L
Official Full Name
small ubiquitin like modifier 3 L homeolog
Primary source
Xenbase:XB-GENE-1004218
See related
EnsemblRapid:ENSXLAG00005029642
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as
smt3a; sumo3; smt3h1
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Genomic context

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Location:
chromosome: 9_10L
Exon count:
6
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 9_10L NC_054387.1 (87135100..87142865, complement)

Chromosome 9_10L - NC_054387.1Genomic Context describing neighboring genes Neighboring gene integrin subunit beta 2 S homeolog Neighboring gene pituitary tumor-transforming 1 interacting protein, gene 1 L homeolog Neighboring gene small ubiquitin-related modifier 3 Neighboring gene ubiquitin conjugating enzyme E2 G2 L homeolog

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054387.1 Chromosome 9_10L Reference Xenopus_laevis_v10.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. SUMO2/3 modification of cyclin E contributes to the control of replication origin firing. Bonne-Andrea C, et al. Nat Commun, 2013. PMID 23673635, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. cyclin E is dynamically and highly conjugated to SUMO2/3 on chromatin, independently of Cdk2 activity and origin activation.
    Title: SUMO2/3 modification of cyclin E contributes to the control of replication origin firing.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables protein tag activity IEA
Inferred from Electronic Annotation
more info
  
enables ubiquitin-like protein ligase binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within protein sumoylation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in PML body IEA
Inferred from Electronic Annotation
more info
  
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
small ubiquitin-related modifier 3
Names
SMT3 suppressor of mif two 3 homolog 3
SUMO-3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086290.1 → NP_001079759.1  small ubiquitin-related modifier 3

    See identical proteins and their annotated locations for NP_001079759.1

    Status: PROVISIONAL

    Source sequence(s)
    BC054172
    UniProtKB/Swiss-Prot
    Q7SZ22
    UniProtKB/TrEMBL
    A0A8J1LST0
    Conserved Domains (1) summary
    cd16115
    Location:16 → 87
    Ubl_SUMO2_3_4; ubiquitin-like (Ubl) domain found in small ubiquitin-related modifier SUMO-2, SUMO-3, SUMO-4, and similar proteins

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054387.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    87135100..87142865 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041575490.1 → XP_041431424.1  small ubiquitin-related modifier 3 isoform X2

    UniProtKB/TrEMBL
    A0A8J1LRS0
    Related
    ENSXLAP00005088520.1, ENSXLAT00005090190.1
    Conserved Domains (1) summary
    cd16115
    Location:16 → 87
    Ubl_SUMO2_3_4; ubiquitin-like (Ubl) domain found in small ubiquitin-related modifier SUMO-2, SUMO-3, SUMO-4, and similar proteins

  2. XM_041575489.1 → XP_041431423.1  small ubiquitin-related modifier 3 isoform X1

    UniProtKB/TrEMBL
    A0A8J1LPC4
    Conserved Domains (1) summary
    cd16115
    Location:18 → 89
    Ubl_SUMO2_3_4; ubiquitin-like (Ubl) domain found in small ubiquitin-related modifier SUMO-2, SUMO-3, SUMO-4, and similar proteins
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q7SZ22.1 GenPept UniProtKB/Swiss-Prot:Q7SZ22

Gene LinkOut

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