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wdr36.S WD repeat domain 36 S homeolog [ Xenopus laevis (African clawed frog) ]

Gene ID: 379385, updated on 18-Sep-2024

Summary

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Official Symbol
wdr36.S
Official Full Name
WD repeat domain 36 S homeolog
Primary source
Xenbase:XB-GENE-17339491
Locus tag
XELAEV_18010780mg
See related
EnsemblRapid:ENSXLAG00005005773
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus laevis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
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Genomic context

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Location:
chromosome: 1S
Exon count:
23
Annotation release Status Assembly Chr Location
101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (161544208..161571780, complement)
100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (145545389..145573066, complement)

Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene StAR related lipid transfer domain containing 4 S homeolog Neighboring gene calcium/calmodulin-dependent protein kinase IV S homeolog Neighboring gene solute carrier family 25 member 46 S homeolog Neighboring gene uncharacterized LOC121399504

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC53182

Gene Ontology Provided by Xenbase

Process Evidence Code Pubs
acts_upstream_of_or_within rRNA processing IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome IEA
Inferred from Electronic Annotation
more info
  
part_of small-subunit processome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
WD repeat domain 36 S homeolog
Names
WD repeat-containing protein 36-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001086229.1 → NP_001079698.1  WD repeat domain 36 S homeolog

    See identical proteins and their annotated locations for NP_001079698.1

    Status: PROVISIONAL

    Source sequence(s)
    BC047972
    UniProtKB/TrEMBL
    A0A974DV40, Q801Q6
    Related
    ENSXLAP00005017169.1, ENSXLAT00005017465.1
    Conserved Domains (4) summary
    COG2319
    Location:100 → 609
    WD40; WD40 repeat [General function prediction only]
    pfam04192
    Location:669 → 892
    Utp21; Utp21 specific WD40 associated putative domain
    sd00039
    Location:477 → 523
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:233 → 595
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

  1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

    Range
    161544208..161571780 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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