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PERK9 Protein kinase superfamily protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3767664, updated on 15-Feb-2024

Summary

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Gene symbol
PERK9
Gene description
Protein kinase superfamily protein
Primary source
Araport:AT1G68690
Locus tag
AT1G68690
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
AtPERK9; F24J5.8; F24J5_8; proline-rich extensin-like receptor kinase 9
Summary
Encodes a member of the proline-rich extensin-like receptor kinase (PERK) family. This family consists of 15 predicted receptor kinases (PMID: 15653807).
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Genomic context

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See PERK9 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
9
Sequence:
Chromosome: 1; NC_003070.9 (25788305..25792324)

Chromosome 1 - NC_003070.9Genomic Context describing neighboring genes Neighboring gene myb-like transcription factor family protein Neighboring gene SH3/FCH domain protein Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003070.9

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. PERK-KIPK-KCBP signalling negatively regulates root growth in Arabidopsis thaliana. Humphrey TV, et al. J Exp Bot, 2015 Jan. PMID 25262228, Free PMC Article
  2. Integrative Analysis from the Epigenome to Translatome Uncovers Patterns of Dominant Nuclear Regulation during Transient Stress. Lee TA, et al. Plant Cell, 2019 Nov. PMID 31519798, Free PMC Article
  3. MAPK target networks in Arabidopsis thaliana revealed using functional protein microarrays. Popescu SC, et al. Genes Dev, 2009 Jan 1. PMID 19095804, Free PMC Article
  4. Multi-omics network-based functional annotation of unknown Arabidopsis genes. Depuydt T, et al. Plant J, 2021 Nov. PMID 34562334
  5. Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana. Theologis A, et al. Nature, 2000 Dec 14. PMID 11130712

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

NM_001334374.1
NM_001334375.1
NM_105541.3

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables protein kinase binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables protein serine/threonine kinase activity IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within cellular response to hypoxia HEP PubMed 
Component Evidence Code Pubs
located_in nucleus ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
Protein kinase superfamily protein
NP_177036.1
  • Protein kinase superfamily protein; FUNCTIONS IN: protein serine/threonine kinase activity, protein kinase activity, ATP binding; INVOLVED IN: protein amino acid phosphorylation; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.06 six leaves visible, LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine/threonine-protein kinase-like domain (InterPro:IPR017442), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271); BEST Arabidopsis thaliana protein match is: proline-rich extensin-like receptor kinase 10 (TAIR:AT1G26150.1); Has 570812 Blast hits to 252659 proteins in 6239 species: Archae - 1199; Bacteria - 114498; Metazoa - 211977; Fungi - 79751; Plants - 80044; Viruses - 11567; Other Eukaryotes - 71776 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003070.9 Reference assembly

    Range
    25788305..25792324
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001334373.1 → NP_001320810.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SX31
    UniProtKB/TrEMBL
    A0A178WAI3, A0A5S9WQL4
    Conserved Domains (1) summary
    cd14066
    Location:383 → 652
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  2. NM_105541.3 → NP_177036.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    See identical proteins and their annotated locations for NP_177036.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SX31
    UniProtKB/TrEMBL
    A0A178WAI3, A0A5S9WQL4
    Conserved Domains (1) summary
    cd14066
    Location:383 → 652
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  3. NM_001334374.1 → NP_001320812.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9SX31
    UniProtKB/TrEMBL
    A0A178WAI3, A0A5S9WQL4
    Conserved Domains (1) summary
    cd14066
    Location:383 → 652
    STKc_IRAK; Catalytic domain of the Serine/Threonine kinases, Interleukin-1 Receptor Associated Kinases and related STKs

  4. NM_001334375.1 → NP_001320811.1  Protein kinase superfamily protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A178WAI3, A0A1P8AP18
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9SX31.1

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