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CAALFM_C111280WA uncharacterized protein [ Candida albicans SC5314 ]

Gene ID: 3644554, updated on 30-Nov-2023

Summary

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Gene symbol
CAALFM_C111280WA
Gene description
uncharacterized protein
Locus tag
CAALFM_C111280WA
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Candida albicans SC5314 (strain: SC5314, nat-host: Homo sapiens, culture-collection: ATCC:MYA-2876)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida
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Genomic context

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Location:
chromosome: 1
Exon count:
1
Sequence:
Chromosome: 1; NC_032089.1 (2476659..2477750)

Chromosome 1 - NC_032089.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene mRNA splicing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032089.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Muzzey D, et al. Genome Biol, 2013. PMID 24025428, Free PMC Article
  2. Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes. van het Hoog M, et al. Genome Biol, 2007. PMID 17419877, Free PMC Article
  3. The diploid genome sequence of Candida albicans. Jones T, et al. Proc Natl Acad Sci U S A, 2004 May 11. PMID 15123810, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pre-mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 1 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
XP_713807.1
  • Ortholog(s) have U6 snRNA binding, pre-mRNA binding activity and role in mRNA cis splicing, via spliceosome, spliceosomal snRNP assembly

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_032089.1 Reference assembly

    Range
    2476659..2477750
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_708714.1 → XP_713807.1  uncharacterized protein CAALFM_C111280WA [Candida albicans SC5314]

    See identical proteins and their annotated locations for XP_713807.1

    Status: PROVISIONAL

    UniProtKB/Swiss-Prot
    A0A1D8PF37, Q59W50
    UniProtKB/TrEMBL
    A0A8H6BUP4, C4YCS4
    Conserved Domains (2) summary
    pfam16131
    Location:15 → 120
    Torus; Torus domain
    cd12360
    Location:140 → 216
    RRM_cwf2; RNA recognition motif (RRM) found in yeast pre-mRNA-splicing factor Cwc2 and similar proteins
Nucleotide Protein
Heading Accession and Version

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