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CAALFM_CR10390WA TRAPP subunit [ Candida albicans SC5314 ]

Gene ID: 3638954, updated on 30-Nov-2023

Summary

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Gene symbol
CAALFM_CR10390WA
Gene description
TRAPP subunit
Locus tag
CAALFM_CR10390WA
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Candida albicans SC5314 (strain: SC5314, nat-host: Homo sapiens, culture-collection: ATCC:MYA-2876)
Lineage
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Debaryomycetaceae; Candida/Lodderomyces clade; Candida
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Genomic context

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See CAALFM_CR10390WA in Genome Data Viewer
Location:
chromosome: R
Exon count:
1
Sequence:
Chromosome: R; NC_032096.1 (2216407..2217153)

Chromosome R - NC_032096.1Genomic Context describing neighboring genes Neighboring gene translation initiation factor eIF3 subunit j Neighboring gene uncharacterized protein Neighboring gene peptide alpha-N-acetyltransferase complex A subunit Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_032096.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Assembly of a phased diploid Candida albicans genome facilitates allele-specific measurements and provides a simple model for repeat and indel structure. Muzzey D, et al. Genome Biol, 2013. PMID 24025428, Free PMC Article
  2. Assembly of the Candida albicans genome into sixteen supercontigs aligned on the eight chromosomes. van het Hoog M, et al. Genome Biol, 2007. PMID 17419877, Free PMC Article
  3. The diploid genome sequence of Candida albicans. Jones T, et al. Proc Natl Acad Sci U S A, 2004 May 11. PMID 15123810, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of TRAPPI protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of TRAPPII protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of TRAPPIII protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TRAPP subunit
XP_719376.1
  • Protein involved in endoplasmic reticulum (ER) to Golgi vesicle-mediated transport; putative subunit of the transport protein particle (TRAPP) complex of the cis-Golgi; Spider biofilm induced

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_032096.1 Reference assembly

    Range
    2216407..2217153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_714283.1 → XP_719376.1  TRAPP subunit [Candida albicans SC5314]

    See identical proteins and their annotated locations for XP_719376.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A1D8PU84, A0A8H6BVB4, C4YN58
    Conserved Domains (1) summary
    cd14943
    Location:77 → 236
    TRAPPC5_Trs31; Trs31 subunit of the TRAPP complex
Nucleotide Protein
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Other Literature Sources
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Research Materials