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Plekha6 pleckstrin homology domain containing A6 [ Rattus norvegicus (Norway rat) ]

Gene ID: 360842, updated on 17-Aug-2024

Summary

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Symbol
Plekha6provided by RGD
Full Name
pleckstrin homology domain containing A6provided by RGD
Primary source
RGD:1564395
See related
EnsemblRapid:ENSRNOG00000002907 AllianceGenome:RGD:1564395
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1564395
Summary
Orthologous to human PLEKHA6 (pleckstrin homology domain containing A6). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in Kidney (RPKM 97.1), Adrenal (RPKM 44.2) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
13q13
Exon count:
34
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (47166899..47307003)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (44614740..44754951)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (50555454..50582236, complement)

Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene MDM4 regulator of p53 Neighboring gene phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta Neighboring gene protein phosphatase 1, regulatory subunit 15B Neighboring gene golgi transport 1A Neighboring gene KiSS-1 metastasis-suppressor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Congenic mapping and sequence analysis of the Renin locus. Flister MJ, et al. Hypertension, 2013 Apr. PMID 23460292, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

General protein information

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Preferred Names
pleckstrin homology domain-containing family A member 6
Names
pleckstrin homology domain containing, family A member 6
pleckstrin homology domain-containing family A member 6-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001427839.1 → NP_001414768.1  pleckstrin homology domain-containing family A member 6

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000013
    UniProtKB/TrEMBL
    A0A8I6AI30
    Related
    ENSRNOP00000093717.2, ENSRNOT00000107878.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086031.1 Reference GRCr8

    Range
    47166899..47307003
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039091292.2 → XP_038947220.2  pleckstrin homology domain-containing family A member 6 isoform X3

    UniProtKB/TrEMBL
    A0A8I6AI30

  2. XM_039091296.2 → XP_038947224.2  pleckstrin homology domain-containing family A member 6 isoform X8

    UniProtKB/TrEMBL
    A0A8I6AI30

  3. XM_039091307.2 → XP_038947235.2  pleckstrin homology domain-containing family A member 6 isoform X23

    UniProtKB/TrEMBL
    A0A8I6AI30

  4. XM_039091295.2 → XP_038947223.1  pleckstrin homology domain-containing family A member 6 isoform X7

    UniProtKB/TrEMBL
    A0A8I6AI30
    Conserved Domains (3) summary
    PRK14086
    Location:370 → 531
    dnaA; chromosomal replication initiator protein DnaA
    cd13248
    Location:165 → 288
    PH_PEPP1_2_3; Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain
    TIGR04523
    Location:723 → 869
    Mplasa_alph_rch; helix-rich Mycoplasma protein

  5. XM_063272453.1 → XP_063128523.1  pleckstrin homology domain-containing family A member 6 isoform X21

    UniProtKB/TrEMBL
    A0A8I6AI30

  6. XM_063272444.1 → XP_063128514.1  pleckstrin homology domain-containing family A member 6 isoform X10

    UniProtKB/TrEMBL
    A0A8I6AI30

  7. XM_063272462.1 → XP_063128532.1  pleckstrin homology domain-containing family A member 6 isoform X30

    UniProtKB/TrEMBL
    A6IC71

  8. XM_063272463.1 → XP_063128533.1  pleckstrin homology domain-containing family A member 6 isoform X31

    UniProtKB/TrEMBL
    A0A8I6AC02

  9. XM_063272440.1 → XP_063128510.1  pleckstrin homology domain-containing family A member 6 isoform X2

    UniProtKB/TrEMBL
    A0A8I6AI30

  10. XM_063272449.1 → XP_063128519.1  pleckstrin homology domain-containing family A member 6 isoform X17

    UniProtKB/TrEMBL
    A0A8I6AI30

  11. XM_063272457.1 → XP_063128527.1  pleckstrin homology domain-containing family A member 6 isoform X25

    UniProtKB/TrEMBL
    A6IC71

  12. XM_039091294.2 → XP_038947222.1  pleckstrin homology domain-containing family A member 6 isoform X6

    UniProtKB/TrEMBL
    A0A8I6AI30
    Conserved Domains (3) summary
    PRK14086
    Location:350 → 511
    dnaA; chromosomal replication initiator protein DnaA
    cd13248
    Location:165 → 268
    PH_PEPP1_2_3; Phosphoinositol 3-phosphate binding proteins 1, 2, and 3 pleckstrin homology (PH) domain
    TIGR04523
    Location:703 → 849
    Mplasa_alph_rch; helix-rich Mycoplasma protein

  13. XM_063272461.1 → XP_063128531.1  pleckstrin homology domain-containing family A member 6 isoform X29

    UniProtKB/TrEMBL
    A0A8I6AC02
    Related
    ENSRNOP00000093888.1, ENSRNOT00000100205.2

  14. XM_063272439.1 → XP_063128509.1  pleckstrin homology domain-containing family A member 6 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AI30

  15. XM_063272447.1 → XP_063128517.1  pleckstrin homology domain-containing family A member 6 isoform X13

    UniProtKB/TrEMBL
    A0A8I6AI30

  16. XM_063272443.1 → XP_063128513.1  pleckstrin homology domain-containing family A member 6 isoform X9

    UniProtKB/TrEMBL
    A0A8I6AI30

  17. XM_063272452.1 → XP_063128522.1  pleckstrin homology domain-containing family A member 6 isoform X20

    UniProtKB/TrEMBL
    A6IC71

  18. XM_063272441.1 → XP_063128511.1  pleckstrin homology domain-containing family A member 6 isoform X4

    UniProtKB/TrEMBL
    A0A8I6AI30

  19. XM_063272445.1 → XP_063128515.1  pleckstrin homology domain-containing family A member 6 isoform X11

    UniProtKB/TrEMBL
    A0A8I5ZUH5

  20. XM_039091302.2 → XP_038947230.2  pleckstrin homology domain-containing family A member 6 isoform X15

    UniProtKB/TrEMBL
    A0A8I5ZUH5

  21. XM_063272446.1 → XP_063128516.1  pleckstrin homology domain-containing family A member 6 isoform X12

    UniProtKB/TrEMBL
    A0A8I5ZUH5

  22. XM_063272450.1 → XP_063128520.1  pleckstrin homology domain-containing family A member 6 isoform X18

    UniProtKB/TrEMBL
    A0A8I5ZUH5

  23. XM_063272455.1 → XP_063128525.1  pleckstrin homology domain-containing family A member 6 isoform X24

    UniProtKB/TrEMBL
    A6IC71

  24. XM_039091306.2 → XP_038947234.2  pleckstrin homology domain-containing family A member 6 isoform X22

    UniProtKB/TrEMBL
    A0A8I5ZUH5

  25. XM_063272460.1 → XP_063128530.1  pleckstrin homology domain-containing family A member 6 isoform X28

    UniProtKB/TrEMBL
    A0A8I6AC02

  26. XM_063272442.1 → XP_063128512.1  pleckstrin homology domain-containing family A member 6 isoform X5

    UniProtKB/TrEMBL
    A0A8I6AI30

  27. XM_063272448.1 → XP_063128518.1  pleckstrin homology domain-containing family A member 6 isoform X14

    UniProtKB/TrEMBL
    A0A8I5ZUH5

  28. XM_063272451.1 → XP_063128521.1  pleckstrin homology domain-containing family A member 6 isoform X19

    UniProtKB/TrEMBL
    A0A8I6AI30

  29. XM_039091308.2 → XP_038947236.2  pleckstrin homology domain-containing family A member 6 isoform X23

    UniProtKB/TrEMBL
    A0A8I6AI30

  30. XM_063272458.1 → XP_063128528.1  pleckstrin homology domain-containing family A member 6 isoform X26

    UniProtKB/TrEMBL
    A0A8I6AI30

  31. XM_063272454.1 → XP_063128524.1  pleckstrin homology domain-containing family A member 6 isoform X23

    UniProtKB/TrEMBL
    A0A8I6AI30

  32. XM_039091309.2 → XP_038947237.2  pleckstrin homology domain-containing family A member 6 isoform X23

    UniProtKB/TrEMBL
    A0A8I6AI30

  33. XM_039091303.2 → XP_038947231.2  pleckstrin homology domain-containing family A member 6 isoform X16

    UniProtKB/TrEMBL
    A0A8I6AI30

  34. XM_063272459.1 → XP_063128529.1  pleckstrin homology domain-containing family A member 6 isoform X27

    UniProtKB/TrEMBL
    A0A8I5ZUH5

  35. XM_341118.10 → XP_341119.7  pleckstrin homology domain-containing family A member 6 isoform X32

    UniProtKB/TrEMBL
    A0A8I6AI30
Nucleotide Protein Strain
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