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rdh14b retinol dehydrogenase 14b [ Danio rerio (zebrafish) ]

Gene ID: 334665, updated on 25-Apr-2024

Summary

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Official Symbol
rdh14bprovided by ZNC
Official Full Name
retinol dehydrogenase 14bprovided by ZNC
Primary source
ZFIN:ZDB-GENE-030131-6605
See related
Ensembl:ENSDARG00000002467 AllianceGenome:ZFIN:ZDB-GENE-030131-6605
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
rdh14; fk47f05; wu:fk47f05; si:dkey-174m14.2
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human RDH14 (retinol dehydrogenase 14). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs
all
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Genomic context

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Location:
chromosome: 20
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (9421451..9428018, complement)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (9433712..9440279, complement)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene synaptotagmin XIVb Neighboring gene 5'-nucleotidase, cytosolic IB b Neighboring gene si:dkey-174m14.3 Neighboring gene coiled-coil domain-containing protein 106-like Neighboring gene cysteine-rich protein 2-like Neighboring gene RAD51 paralog B

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Wang D, et al. Proc Natl Acad Sci U S A, 2007 Jul 24. PMID 17640903, Free PMC Article
  2. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  3. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  5. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Clone Names

  • MGC153839

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables all-trans-retinol dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
  
enables oxidoreductase activity IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
retinol dehydrogenase 14b
Names
retinol dehydrogenase 14 (all-trans and 9-cis)
retinol dehydrogenase 14b (all-trans/9-cis/11-cis)
NP_001040655.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001047190.1 → NP_001040655.1  retinol dehydrogenase 14b

    Status: PROVISIONAL

    Source sequence(s)
    BC095278
    UniProtKB/TrEMBL
    A0A8M1NAK9, Q503L5
    Related
    ENSDARP00000014422.7, ENSDART00000025330.8
    Conserved Domains (2) summary
    PRK06197
    Location:41 → 322
    PRK06197; short chain dehydrogenase; Provisional
    cl21454
    Location:41 → 315
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    9421451..9428018 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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