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CNH00600 specific RNA polymerase II transcription factor, putative [ Cryptococcus neoformans var. neoformans JEC21 ]

Gene ID: 3259290, updated on 23-Oct-2023

Summary

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Gene symbol
CNH00600
Gene description
specific RNA polymerase II transcription factor, putative
Locus tag
CNH00600
Gene type
protein coding
RNA name
specific RNA polymerase II transcription factor, putative
RefSeq status
PROVISIONAL
Organism
Cryptococcus neoformans var. neoformans JEC21 (strain: JEC21, serotype: D)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Tremellomycetes; Tremellales; Cryptococcaceae; Cryptococcus; Cryptococcus neoformans species complex
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Genomic context

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Location:
chromosome: 8
Exon count:
6
Sequence:
Chromosome: 8; NC_006693.1 (1012388..1015417)

Chromosome 8 - NC_006693.1Genomic Context describing neighboring genes Neighboring gene Rab guanyl-nucleotide exchange factor, putative Neighboring gene cation:cation antiporter, putative Neighboring gene helicase, putative Neighboring gene tRNA-Leu Neighboring gene centromeric DNA binding protein, putative

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_006693.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome of the basidiomycetous yeast and human pathogen Cryptococcus neoformans. Loftus BJ, et al. Science, 2005 Feb 25. PMID 15653466, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
specific RNA polymerase II transcription factor, putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_006693.1 Reference assembly

    Range
    1012388..1015417
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_572252.2 → XP_572252.1  specific RNA polymerase II transcription factor, putative [Cryptococcus neoformans var. neoformans JEC21]

    See identical proteins and their annotated locations for XP_572252.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    Q5KCD1
    Conserved Domains (3) summary
    COG5048
    Location:646 → 702
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:623 → 642
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:634 → 658
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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